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  • TISSUE

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  • CSRP1
BRAIN MIDBRAIN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Midbrain
Brain methods
MIDBRAIN - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:743.4 nTPM
HPA Brain:872.9 nTPM
GTEx:743.4 nTPM
FANTOM5:1185.4 Scaled Tags Per Million
Pig:504.4 nTPM
Mouse:505.0 nTPM
Allen mouse:5.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

872.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 727.4
2586 Male, age 75, left hemisphere 927.5
2828 Female, age 72, unknown 885.6
1833 Male, age 53, unknown 777.9
1870 Female, age 42, unknown 773.0
1830 Male, age 51, unknown 743.1
2411 Female, age 72, unknown 722.3
2666 Male, age 74, left hemisphere 710.8
2019 Male, age 18, unknown 672.9
1827 Male, age 72, unknown 637.4
2219 Male, age 76, both hemispheres 423.3
Dorsal raphe nucleus
nTPM: 588.0
2016 Female, age 72, unknown 728.9
1828 Male, age 53, unknown 648.5
2750 Male, age 76, both hemispheres 574.8
2047 Male, age 72, unknown 511.1
2298 Female, age 72, unknown 476.9
Inferior colliculus
nTPM: 679.5
2849 Male, age 72, unknown 779.4
1848 Female, age 42, unknown 728.9
1890 Male, age 53, unknown 617.7
2097 Female, age 72, unknown 592.1
Median raphe nucleus
nTPM: 366.2
2220 Male, age 76, midline 366.2
Periaquaductal grey, anterior
nTPM: 606.6
2502 Female, age 75, unknown 777.6
1947 Male, age 18, unknown 567.8
1795 Male, age 51, unknown 474.4
Periaquaductal grey, dorsal
nTPM: 626.9
2464 Female, age 72, unknown 729.3
1840 Male, age 53, unknown 651.0
2850 Male, age 76, both hemispheres 607.6
1831 Male, age 72, unknown 519.7
Periaquaductal grey, lateral
nTPM: 578.9
2053 Male, age 18, unknown 692.0
2140 Male, age 76, both hemispheres 646.1
2272 Male, age 74, both hemispheres 398.5
Pretectal area
nTPM: 587.5
2316 Male, age 76, right hemisphere 731.6
1815 Male, age 53, unknown 694.5
2667 Female, age 75, unknown 669.7
1817 Female, age 42, unknown 639.3
2407 Male, age 75, both hemispheres 628.0
2825 Male, age 18, unknown 624.1
1944 Female, age 72, unknown 549.7
2007 Male, age 72, unknown 518.6
2273 Male, age 74, both hemispheres 484.1
1816 Male, age 51, unknown 483.7
2224 Female, age 72, unknown 439.3
Red nucleus
nTPM: 872.9
1821 Female, age 72, unknown 1045.4
1865 Male, age 51, unknown 1005.7
2769 Male, age 72, unknown 980.0
1904 Male, age 53, unknown 966.0
1954 Female, age 42, unknown 936.6
2503 Female, age 72, unknown 924.4
2227 Male, age 72, unknown 922.0
2823 Male, age 76, right hemisphere 854.2
2588 Male, age 74, left hemisphere 853.3
2785 Male, age 18, unknown 749.5
2725 Female, age 75, unknown 649.6
2584 Male, age 75, left hemisphere 588.7
Substantia nigra
nTPM: 617.1
2699 Male, age 18, unknown 810.4
1851 Male, age 51, unknown 729.9
2409 Female, age 72, unknown 679.2
1889 Female, age 72, unknown 625.1
2583 Male, age 75, right hemisphere 622.4
1916 Female, age 42, unknown 590.8
2590 Female, age 75, unknown 569.8
2241 Male, age 72, unknown 552.5
2665 Male, age 74, both hemispheres 512.6
1941 Male, age 53, unknown 478.1
Superior colliculus
nTPM: 721.5
1995 Male, age 72, unknown 945.9
2664 Male, age 75, both hemispheres 925.9
1913 Female, age 42, unknown 847.1
1839 Male, age 51, unknown 756.4
1895 Male, age 76, right hemisphere 717.3
2587 Male, age 74, left hemisphere 690.9
2668 Female, age 75, unknown 664.2
1796 Male, age 53, unknown 611.3
2087 Female, age 72, unknown 543.0
2261 Male, age 18, unknown 512.9
Ventral tegmental area
nTPM: 573.3
2410 Female, age 72, unknown 810.4
1915 Female, age 42, unknown 605.2
1942 Male, age 51, unknown 542.9
2021 Male, age 53, unknown 531.1
2223 Female, age 72, unknown 508.6
2218 Male, age 76, both hemispheres 441.8

MIDBRAIN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

743.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 743.4
Samples: 183

Max nTPM: 1685.0
Min nTPM: 208.0
Std nTPM: 241.3
Median nTPM: 712.7
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 1685.0
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 1357.5
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 1338.8
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 1269.1
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 1256.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1249.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1245.6
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 1222.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1209.2
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 1205.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1168.6
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 1150.9
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 1139.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 1119.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 1118.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1117.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 1074.4
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 1072.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 1054.7
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 1054.0
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 1053.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 1045.0
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 1035.2
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 1018.5
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 1002.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 992.6
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 979.2
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 978.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 974.3
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 972.6
GTEX-1RQEC-0011-R2b-SM-EY5ZT 60-69 years, male 967.3
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 963.2
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 961.2
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 959.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 959.7
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 950.1
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 942.7
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 928.8
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 925.9
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 923.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 920.6
GTEX-1LSVX-0011-R2a-SM-G8OL9 60-69 years, male 915.7
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 914.5
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 913.4
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 908.5
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 905.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 904.9
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 901.3
GTEX-1NV8Z-0011-R2b-SM-F648N 60-69 years, male 896.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 885.4
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 880.8
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 871.9
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 868.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 863.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 859.9
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 858.9
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 840.6
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 840.3
GTEX-1QMI2-0011-R2b-SM-F648R 60-69 years, male 836.9
GTEX-1RDX4-0011-R2b-SM-F649Z 50-59 years, female 836.4
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 825.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 814.5
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 813.6
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 808.4
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 787.2
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 784.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 782.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 779.9
GTEX-1LG7Y-0011-R2b-SM-G8LMM 50-59 years, male 778.1
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 777.5
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 775.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 775.7
GTEX-1R9PO-0011-R2a-SM-F2TBH 60-69 years, female 775.7
GTEX-1JMPZ-0011-R2a-SM-G8LLS 30-39 years, male 772.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 770.3
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 768.0
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 762.4
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 759.8
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 757.1
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 753.2
GTEX-1JJ6O-0011-R2a-SM-EY5ZO 60-69 years, male 749.9
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 746.6
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 740.0
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 732.9
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 729.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 725.7
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 723.8
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 722.4
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 717.3
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 717.1
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 712.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 712.7
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 708.2
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 706.5
GTEX-1JMQJ-0011-R2a-SM-F6493 50-59 years, male 702.4
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 701.4
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 699.8
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 697.0
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 693.7
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 690.9
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 685.1
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 683.2
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 680.8
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 679.9
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 677.2
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 668.1
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 663.5
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 663.3
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 660.8
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 648.8
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 646.0
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 640.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 638.9
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 638.3
GTEX-1KD5A-0011-R2b-SM-G9EPP 50-59 years, male 636.0
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 631.8
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 631.2
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 627.7
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 625.7
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 622.9
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 619.4
GTEX-1N2EE-0011-R2a-SM-F649F 60-69 years, male 618.3
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 615.9
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 614.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 612.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 607.1
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 603.8
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 603.5
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 601.6
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 600.6
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 598.8
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 596.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 596.6
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 590.1
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 589.6
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 589.5
GTEX-13OVL-0011-R2b-SM-H65ZN 50-59 years, male 585.5
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 583.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 583.0
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 576.7
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 574.5
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 572.4
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 569.7
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 564.4
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 563.5
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 562.4
GTEX-1RQED-0011-R2a-SM-F3K5T 60-69 years, male 560.7
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 547.4
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 544.8
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 540.3
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 535.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 530.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 517.8
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 510.2
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 509.8
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 509.6
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 506.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 501.5
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 496.5
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 496.1
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 495.5
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 495.2
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 494.3
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 462.7
GTEX-111FC-0011-R2a-SM-GIN8S 60-69 years, male 454.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 447.3
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 447.3
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 444.5
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 427.7
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 421.2
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 420.7
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 414.0
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 412.2
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 407.9
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 387.0
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 377.7
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 370.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 357.0
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 349.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 325.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 228.4
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 213.9
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 208.0
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MIDBRAIN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1185.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1185.4
FF:10158-103A5 76 years, female 1185.4

MIDBRAIN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

504.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 504.4
Samples: 4

Max nTPM: 590.2
Min nTPM: 408.7
Sample A Female 481.5
Sample B Female 537.0
Sample C Male 408.7
Sample D Male 590.2
Midbrain
nTPM: 486.1
Samples: 4

Max nTPM: 723.3
Min nTPM: 279.0
Sample A Female 723.3
Sample B Female 632.6
Sample C Male 309.5
Sample D Male 279.0
Periaqueductal gray
nTPM: 417.6
Samples: 3

Max nTPM: 522.6
Min nTPM: 356.1
Sample B Female 522.6
Sample C Male 374.1
Sample D Male 356.1
Superior colliculi
nTPM: 435.4
Samples: 4

Max nTPM: 493.3
Min nTPM: 351.4
Sample A Female 493.3
Sample B Female 351.4
Sample C Male 422.4
Sample D Male 474.5

MIDBRAIN - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

505.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 505.0
Samples: 4

Max nTPM: 542.1
Min nTPM: 478.3
Sample A Male 542.1
Sample B Male 485.7
Sample C Female 478.3
Sample D Female 514.0

MIDBRAIN - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

5.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.0
2130 Antisense, RP_Baylor_102712, Mouse strain C57BL/6J (56 days, male) 6.1
2129 Antisense, RP_Baylor_102712, Mouse strain C57BL/6J (56 days, male) 6.0
68269598 Antisense, RP_041129_01_H05, Mouse strain C57BL/6J (56 days, male) 4.0

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