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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
872.9
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 727.4
2586
Male, age 75, left hemisphere
927.5
2828
Female, age 72, unknown
885.6
1833
Male, age 53, unknown
777.9
1870
Female, age 42, unknown
773.0
1830
Male, age 51, unknown
743.1
2411
Female, age 72, unknown
722.3
2666
Male, age 74, left hemisphere
710.8
2019
Male, age 18, unknown
672.9
1827
Male, age 72, unknown
637.4
2219
Male, age 76, both hemispheres
423.3
Dorsal raphe nucleus nTPM: 588.0
2016
Female, age 72, unknown
728.9
1828
Male, age 53, unknown
648.5
2750
Male, age 76, both hemispheres
574.8
2047
Male, age 72, unknown
511.1
2298
Female, age 72, unknown
476.9
Inferior colliculus nTPM: 679.5
2849
Male, age 72, unknown
779.4
1848
Female, age 42, unknown
728.9
1890
Male, age 53, unknown
617.7
2097
Female, age 72, unknown
592.1
Median raphe nucleus nTPM: 366.2
2220
Male, age 76, midline
366.2
Periaquaductal grey, anterior nTPM: 606.6
2502
Female, age 75, unknown
777.6
1947
Male, age 18, unknown
567.8
1795
Male, age 51, unknown
474.4
Periaquaductal grey, dorsal nTPM: 626.9
2464
Female, age 72, unknown
729.3
1840
Male, age 53, unknown
651.0
2850
Male, age 76, both hemispheres
607.6
1831
Male, age 72, unknown
519.7
Periaquaductal grey, lateral nTPM: 578.9
2053
Male, age 18, unknown
692.0
2140
Male, age 76, both hemispheres
646.1
2272
Male, age 74, both hemispheres
398.5
Pretectal area nTPM: 587.5
2316
Male, age 76, right hemisphere
731.6
1815
Male, age 53, unknown
694.5
2667
Female, age 75, unknown
669.7
1817
Female, age 42, unknown
639.3
2407
Male, age 75, both hemispheres
628.0
2825
Male, age 18, unknown
624.1
1944
Female, age 72, unknown
549.7
2007
Male, age 72, unknown
518.6
2273
Male, age 74, both hemispheres
484.1
1816
Male, age 51, unknown
483.7
2224
Female, age 72, unknown
439.3
Red nucleus nTPM: 872.9
1821
Female, age 72, unknown
1045.4
1865
Male, age 51, unknown
1005.7
2769
Male, age 72, unknown
980.0
1904
Male, age 53, unknown
966.0
1954
Female, age 42, unknown
936.6
2503
Female, age 72, unknown
924.4
2227
Male, age 72, unknown
922.0
2823
Male, age 76, right hemisphere
854.2
2588
Male, age 74, left hemisphere
853.3
2785
Male, age 18, unknown
749.5
2725
Female, age 75, unknown
649.6
2584
Male, age 75, left hemisphere
588.7
Substantia nigra nTPM: 617.1
2699
Male, age 18, unknown
810.4
1851
Male, age 51, unknown
729.9
2409
Female, age 72, unknown
679.2
1889
Female, age 72, unknown
625.1
2583
Male, age 75, right hemisphere
622.4
1916
Female, age 42, unknown
590.8
2590
Female, age 75, unknown
569.8
2241
Male, age 72, unknown
552.5
2665
Male, age 74, both hemispheres
512.6
1941
Male, age 53, unknown
478.1
Superior colliculus nTPM: 721.5
1995
Male, age 72, unknown
945.9
2664
Male, age 75, both hemispheres
925.9
1913
Female, age 42, unknown
847.1
1839
Male, age 51, unknown
756.4
1895
Male, age 76, right hemisphere
717.3
2587
Male, age 74, left hemisphere
690.9
2668
Female, age 75, unknown
664.2
1796
Male, age 53, unknown
611.3
2087
Female, age 72, unknown
543.0
2261
Male, age 18, unknown
512.9
Ventral tegmental area nTPM: 573.3
2410
Female, age 72, unknown
810.4
1915
Female, age 42, unknown
605.2
1942
Male, age 51, unknown
542.9
2021
Male, age 53, unknown
531.1
2223
Female, age 72, unknown
508.6
2218
Male, age 76, both hemispheres
441.8
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
743.4
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 743.4
Samples: 183
Max nTPM: 1685.0
Min nTPM: 208.0
Std nTPM: 241.3
Median nTPM: 712.7
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
1685.0
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
1357.5
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
1338.8
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
1269.1
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
1256.6
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
1249.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
1245.6
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
1222.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
1209.2
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
1205.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
1168.6
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
1150.9
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
1139.2
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
1119.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
1118.0
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
1117.5
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
1074.4
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
1072.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
1054.7
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
1054.0
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
1053.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
1045.0
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
1035.2
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
1018.5
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
1002.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
992.6
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
979.2
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
978.8
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
974.3
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
972.6
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
967.3
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
963.2
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
961.2
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
959.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
959.7
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
950.1
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
942.7
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
928.8
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
925.9
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
923.4
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
920.6
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
915.7
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
914.5
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
913.4
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
908.5
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
905.8
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
904.9
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
901.3
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
896.3
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
885.4
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
880.8
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
871.9
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
868.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
863.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
859.9
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
858.9
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
840.6
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
840.3
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
836.9
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
836.4
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
825.9
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
814.5
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
813.6
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
808.4
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
787.2
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
784.2
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
782.6
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
779.9
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
778.1
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
777.5
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
775.8
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
775.7
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
775.7
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
772.6
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
770.3
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
768.0
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
762.4
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
759.8
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
757.1
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
753.2
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
749.9
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
746.6
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
740.0
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
732.9
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
729.5
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
725.7
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
723.8
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
722.4
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
717.3
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
717.1
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
712.8
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
712.7
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
708.2
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
706.5
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
702.4
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
701.4
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
699.8
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
697.0
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
693.7
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
690.9
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
685.1
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
683.2
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
680.8
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
679.9
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
677.2
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
668.1
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
663.5
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
663.3
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
660.8
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
648.8
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
646.0
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
640.8
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
638.9
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
638.3
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
636.0
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
631.8
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
631.2
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
627.7
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
625.7
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
622.9
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
619.4
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
618.3
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
615.9
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
614.5
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
612.2
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
607.1
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
603.8
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
603.5
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
601.6
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
600.6
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
598.8
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
596.8
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
596.6
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
590.1
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
589.6
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
589.5
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
585.5
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
583.1
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
583.0
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
576.7
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
574.5
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
572.4
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
569.7
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
564.4
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
563.5
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
562.4
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
560.7
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
547.4
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
544.8
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
540.3
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
535.7
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
530.1
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
517.8
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
510.2
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
509.8
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
509.6
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
506.5
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
501.5
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
496.5
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
496.1
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
495.5
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
495.2
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
494.3
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
462.7
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
454.2
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
447.3
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
447.3
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
444.5
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
427.7
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
421.2
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
420.7
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
414.0
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
412.2
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
407.9
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
387.0
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
377.7
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
370.1
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
357.0
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
349.1
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
325.6
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
228.4
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
213.9
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
208.0
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
504.4
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 504.4
Samples: 4
Max nTPM: 590.2
Min nTPM: 408.7
Sample A
Female
481.5
Sample B
Female
537.0
Sample C
Male
408.7
Sample D
Male
590.2
Midbrain nTPM: 486.1
Samples: 4
Max nTPM: 723.3
Min nTPM: 279.0
Sample A
Female
723.3
Sample B
Female
632.6
Sample C
Male
309.5
Sample D
Male
279.0
Periaqueductal gray nTPM: 417.6
Samples: 3
Max nTPM: 522.6
Min nTPM: 356.1
Sample B
Female
522.6
Sample C
Male
374.1
Sample D
Male
356.1
Superior colliculi nTPM: 435.4
Samples: 4
Max nTPM: 493.3
Min nTPM: 351.4
Sample A
Female
493.3
Sample B
Female
351.4
Sample C
Male
422.4
Sample D
Male
474.5
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
505.0
Mouse sample
Sample description
nTPM
Midbrain nTPM: 505.0
Samples: 4
Max nTPM: 542.1
Min nTPM: 478.3
Sample A
Male
542.1
Sample B
Male
485.7
Sample C
Female
478.3
Sample D
Female
514.0
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.