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CSRP1
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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • CSRP1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:587.0 nTPM
FANTOM5:617.3 Scaled Tags Per Million
Pig:145.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA045617
Glial cells Low
Neuronal cells Not detected



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

587.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 587.0
Samples: 300

Max nTPM: 1447.2
Min nTPM: 143.3
Std nTPM: 226.3
Median nTPM: 551.1
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 1447.2
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 1298.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1253.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 1239.4
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 1223.0
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 1197.8
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 1159.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 1140.8
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 1118.1
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 1117.4
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 1100.8
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 1081.2
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 1073.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 1070.0
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 1057.2
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 1053.3
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 1041.5
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 1018.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 1003.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 994.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 986.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 974.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 970.7
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 963.1
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 961.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 954.8
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 927.9
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 902.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 894.2
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 894.0
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 893.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 885.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 872.8
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 870.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 858.6
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 850.9
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 843.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 834.7
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 831.5
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 831.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 828.5
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 826.1
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 820.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 818.1
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 804.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 803.6
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 793.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 782.4
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 782.4
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 781.4
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 780.4
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 778.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 777.2
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 773.3
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 772.0
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 770.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 766.0
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 758.2
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 752.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 748.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 746.0
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 743.6
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 740.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 739.3
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 730.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 724.6
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 722.5
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 722.5
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 713.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 712.5
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 709.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 709.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 702.8
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 702.0
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 700.1
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 698.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 694.0
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 690.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 686.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 685.7
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 682.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 681.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 678.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 677.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 677.3
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 673.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 671.6
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 670.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 669.0
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 666.0
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 665.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 665.0
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 664.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 663.5
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 663.1
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 659.8
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 658.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 657.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 655.9
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 654.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 652.1
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 651.4
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 649.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 648.2
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 644.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 642.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 639.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 637.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 636.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 636.2
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 635.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 633.2
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 626.5
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 623.5
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 619.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 619.5
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 617.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 613.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 609.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 608.4
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 606.7
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 604.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 601.3
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 600.5
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 599.9
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 599.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 597.6
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 596.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 587.9
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 587.4
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 585.1
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 583.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 583.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 580.6
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 580.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 579.1
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 578.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 574.2
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 574.1
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 573.3
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 572.6
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 570.2
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 567.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 565.6
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 565.3
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 565.0
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 562.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 559.4
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 556.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 553.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 548.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 548.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 548.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 544.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 542.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 540.9
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 540.5
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 540.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 539.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 538.2
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 537.7
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 536.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 536.2
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 536.0
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 535.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 534.6
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 533.3
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 530.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 528.6
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 526.1
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 524.0
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 524.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 518.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 513.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 511.6
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 511.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 510.9
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 510.7
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 508.3
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 507.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 506.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 505.8
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 504.1
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 502.8
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 502.4
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 498.5
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 498.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 495.0
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 494.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 493.5
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 489.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 488.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 485.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 478.2
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 474.9
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 474.4
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 467.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 466.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 463.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 460.1
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 458.6
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 457.8
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 457.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 456.9
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 456.7
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 456.1
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 456.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 454.7
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 451.2
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 451.0
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 449.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 448.2
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 447.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 447.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 446.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 446.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 445.9
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 443.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 443.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 437.9
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 437.7
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 437.3
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 424.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 424.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 423.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 420.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 418.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 414.1
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 413.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 411.8
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 411.3
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 411.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 410.7
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 408.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 406.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 406.0
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 402.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 401.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 400.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 396.1
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 395.7
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 392.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 392.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 388.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 386.1
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 377.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 374.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 373.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 367.7
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 366.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 365.2
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 363.8
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 361.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 361.3
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 360.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 360.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 357.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 354.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 353.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 353.3
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 352.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 350.7
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 349.4
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 344.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 343.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 340.1
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 337.5
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 337.3
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 334.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 333.4
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 322.4
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 320.8
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 320.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 316.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 314.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 313.1
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 307.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 307.0
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 306.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 305.7
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 302.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 301.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 296.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 294.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 291.9
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 289.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 284.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 281.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 279.4
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 275.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 259.2
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 255.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 250.8
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 247.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 245.5
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 220.8
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 199.3
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 192.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 190.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 143.3
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

617.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 617.3
FF:10164-103B2 76 years, female 617.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

145.2
Pig sample Sample description nTPM
Caudate
nTPM: 145.2
Samples: 4

Max nTPM: 172.6
Min nTPM: 128.1
Sample A Female 131.2
Sample B Female 148.9
Sample C Male 172.6
Sample D Male 128.1

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