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  • CSRP1
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
Tissue methods
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:539.8 nTPM
HPA:173.7 nTPM
GTEx:539.8 nTPM
FANTOM5:635.4 Scaled Tags Per Million
SMALL INTESTINE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA045617
Glandular cells High


SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

173.7
overview
Male, age 65
Small intestine sample 232
nTPM: 86.5
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 193.4
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 211.2
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 203.8

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

539.8
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 539.8
Samples: 207

Max nTPM: 4475.2
Min nTPM: 69.6
Std nTPM: 735.1
Median nTPM: 199.8
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 4475.2
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 3001.9
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 2939.9
GTEX-XPT6-1026-SM-GOQYN 20-29 years, male 2715.1
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 2691.3
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 2670.0
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 2524.3
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 2512.0
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 2466.6
GTEX-178AV-1226-SM-GOR11 40-49 years, male 2426.3
GTEX-ZPU1-1826-SM-GNTB3 40-49 years, male 2413.6
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 2259.6
GTEX-117YX-0326-SM-5GICL 50-59 years, male 2258.3
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 2137.1
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 2045.6
GTEX-YB5K-1126-SM-H6Q6O 40-49 years, female 2022.8
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 2000.1
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 1875.2
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1874.0
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 1767.7
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 1688.6
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 1657.9
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 1636.8
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 1598.1
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 1504.1
GTEX-13111-1426-SM-5DUW3 50-59 years, male 1501.3
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 1446.0
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 1376.6
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 1191.7
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 1153.9
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 1130.7
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 1128.3
GTEX-W5X1-1926-SM-GOQYX 40-49 years, female 1103.8
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 1066.8
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 1066.4
GTEX-WHPG-1826-SM-GNTAH 50-59 years, male 1044.7
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 971.7
GTEX-1192X-2526-SM-59868 50-59 years, male 901.4
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 879.8
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 879.5
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 793.2
GTEX-U8XE-2226-SM-HAUZQ 30-39 years, male 790.3
GTEX-X3Y1-1526-SM-H6Q6X 40-49 years, male 783.1
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 773.7
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 731.2
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 719.3
GTEX-YJ8A-2126-SM-GQ1C7 20-29 years, male 711.9
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 673.4
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 648.5
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 548.2
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 540.6
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 534.2
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 518.0
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 470.9
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 439.4
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 433.9
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 394.8
GTEX-1RQED-2826-SM-HLJQK 60-69 years, male 390.1
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 385.3
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 381.7
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 374.6
GTEX-1PFEY-1326-SM-HK791 30-39 years, male 365.4
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 361.0
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 359.3
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 355.1
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 342.6
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 336.6
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 332.1
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 325.6
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 318.9
GTEX-1M5QR-2226-SM-HLJRV 40-49 years, male 303.4
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 302.0
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 294.7
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 289.0
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 287.3
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 287.1
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 279.4
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 279.2
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 260.9
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 259.0
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 253.7
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 249.6
GTEX-X4LF-1326-SM-HLJSD 50-59 years, male 243.1
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 234.6
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 232.6
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 231.2
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 224.1
GTEX-1MA7W-0726-SM-HLJQU 20-29 years, female 223.4
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 221.8
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 220.3
GTEX-YFCO-1326-SM-664NV 40-49 years, male 217.9
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 215.6
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 214.7
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 211.5
GTEX-ZV7C-1426-SM-GNTB8 50-59 years, male 210.3
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 208.5
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 207.3
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 203.4
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 202.9
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 200.7
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 200.6
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 200.0
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 199.9
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 199.8
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 198.6
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 194.0
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 192.3
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 192.2
GTEX-1HBPN-1926-SM-GA91H 50-59 years, male 192.1
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 189.3
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 188.2
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 183.2
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 181.2
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 177.2
GTEX-1NHNU-2526-SM-HK79M 50-59 years, male 176.6
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 173.8
GTEX-1MCYP-1626-SM-HLJQ5 20-29 years, female 173.7
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 173.5
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 171.0
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 171.0
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 170.9
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 170.4
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 170.1
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 169.5
GTEX-1HSGN-2126-SM-GA8ZB 40-49 years, female 169.2
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 167.0
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 166.9
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 164.7
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 164.6
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 164.5
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 164.4
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 164.0
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 163.6
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 161.4
GTEX-13113-1226-SM-5EGHT 60-69 years, female 161.1
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 158.7
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 158.7
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 158.3
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 157.9
GTEX-1HKZK-2226-SM-GA91V 40-49 years, male 154.8
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 153.9
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 152.8
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 152.5
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 151.9
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 149.0
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 148.9
GTEX-13X6H-1826-SM-5O9D1 50-59 years, female 148.4
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 148.4
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 148.3
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 147.6
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 146.9
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 143.8
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 142.1
GTEX-13O61-1326-SM-5KM31 60-69 years, male 140.8
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 140.0
GTEX-ZTSS-0926-SM-59865 40-49 years, male 140.0
GTEX-1122O-1326-SM-5H11F 60-69 years, female 139.8
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 139.1
GTEX-14PK6-1626-SM-6871I 70-79 years, female 138.2
GTEX-14PKU-1626-SM-6871C 40-49 years, female 137.4
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 136.3
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 136.2
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 134.7
GTEX-14PN3-2026-SM-68729 60-69 years, female 133.3
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 130.8
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 130.7
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 130.0
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 129.4
GTEX-1S831-1526-SM-HLJQS 20-29 years, male 129.0
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 128.6
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 128.5
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 127.8
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 127.4
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 126.9
GTEX-1C475-1426-SM-793CH 40-49 years, female 126.7
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 126.3
GTEX-144GM-1026-SM-5O9AZ 20-29 years, male 126.3
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 125.7
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 124.6
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 124.5
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 124.0
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 120.9
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 119.6
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 119.0
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 119.0
GTEX-ZT9X-1026-SM-HLJS2 40-49 years, male 118.8
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 118.1
GTEX-1HCUA-1726-SM-GA8Z2 50-59 years, female 116.4
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 113.0
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 112.6
GTEX-111YS-1426-SM-5GID8 60-69 years, male 108.2
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 107.3
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 106.5
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 105.3
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 104.4
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 103.4
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 102.2
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 101.7
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 100.9
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 100.9
GTEX-183FY-1626-SM-793D8 20-29 years, male 99.2
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 94.3
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 93.6
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 92.1
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 87.6
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 74.4
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 69.6
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

635.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 635.4
FF:10024-101D6 15,40,85 years, mixed 635.4

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