We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
CSRP1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • CSRP1
TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Tissue methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:545.4 nTPM
HPA Brain:627.1 nTPM
GTEx:545.4 nTPM
FANTOM5:612.8 Scaled Tags Per Million
Pig:625.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

627.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 605.0
2048 Male, age 55, midline 700.6
2565 Male, age 75, midline 654.9
1981 Female, age 72, midline 653.2
2194 Female, age 79, both hemispheres 549.8
2816 Male, age 47, midline 466.8
Cervical spinal cord, dorsal horn
nTPM: 528.3
2173 Female, age 72, unknown 670.0
1877 Male, age 55, unknown 581.4
2069 Male, age 47, both hemispheres 533.8
2721 Male, age 90, both hemispheres 494.0
2297 Male, age 75, both hemispheres 449.3
2296 Male, age 66, both hemispheres 441.2
Cervical spinal cord, ventral horn
nTPM: 627.1
2809 Male, age 90, both hemispheres 713.1
2295 Male, age 66, both hemispheres 698.2
2098 Female, age 72, unknown 660.3
2480 Male, age 75, both hemispheres 597.9
2068 Male, age 55, unknown 569.6
2820 Female, age 79, both hemispheres 523.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

545.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 545.4
Samples: 204

Max nTPM: 1574.3
Min nTPM: 184.2
Std nTPM: 158.2
Median nTPM: 526.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1574.3
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 1102.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 928.1
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 876.7
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 871.6
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 863.2
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 838.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 822.4
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 806.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 789.2
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 785.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 780.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 771.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 766.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 763.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 752.4
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 752.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 748.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 746.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 740.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 731.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 728.2
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 725.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 724.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 718.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 717.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 711.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 710.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 710.1
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 709.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 687.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 683.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 678.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 675.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 668.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 666.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 666.4
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 661.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 658.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 654.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 652.0
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 649.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 647.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 643.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 640.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 638.9
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 634.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 632.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 629.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 628.0
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 625.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 622.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 622.2
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 619.8
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 610.0
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 608.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 607.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 606.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 606.3
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 602.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 601.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 600.0
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 597.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 596.0
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 595.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 595.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 595.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 594.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 592.0
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 590.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 584.1
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 582.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 579.6
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 578.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 577.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 573.5
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 572.5
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 570.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 569.1
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 567.2
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 564.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 564.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 563.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 562.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 562.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 558.1
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 556.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 556.0
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 553.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 552.4
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 546.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 540.4
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 538.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 536.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 536.1
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 535.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 534.2
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 533.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 532.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 531.5
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 529.6
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 526.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 526.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 523.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 523.4
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 522.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 521.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 520.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 518.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 517.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 517.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 514.2
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 513.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 513.9
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 511.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 508.5
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 507.9
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 506.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 502.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 501.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 501.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 499.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 499.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 498.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 496.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 495.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 490.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 489.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 489.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 488.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 486.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 483.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 481.0
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 478.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 476.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 475.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 474.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 473.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 472.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 470.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 470.2
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 468.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 462.8
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 462.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 457.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 456.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 455.1
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 454.9
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 453.8
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 451.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 448.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 443.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 443.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 442.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 440.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 439.9
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 439.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 437.3
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 437.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 436.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 436.4
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 435.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 433.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 431.8
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 430.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 426.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 425.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 423.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 423.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 422.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 416.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 415.8
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 410.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 405.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 400.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 399.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 399.2
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 396.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 394.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 392.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 390.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 390.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 388.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 382.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 378.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 363.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 350.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 349.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 344.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 336.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 335.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 335.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 334.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 326.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 325.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 323.3
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 316.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 298.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 294.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 253.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 246.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 234.2
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 228.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 184.2
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

612.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 612.8
FF:10159-103A6 76 years, female 626.4
FF:10181-103D1 60 years, female 599.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

625.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 469.1
Samples: 4

Max nTPM: 514.9
Min nTPM: 406.5
Sample A Female 406.5
Sample B Female 501.4
Sample C Male 514.9
Sample D Male 453.4
Ventral spinal cord
nTPM: 625.4
Samples: 4

Max nTPM: 719.0
Min nTPM: 526.9
Sample A Female 552.4
Sample B Female 719.0
Sample C Male 703.2
Sample D Male 526.9

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo