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CSRP1
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  • CSRP1
TISSUE PRIMARY DATA URINARY BLADDER Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Urinary bladder
Tissue proteome
Tissue methods
URINARY BLADDER - Expression summary
Protein expression
Urinary bladderi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Urothelial cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1846.8 nTPM
HPA:668.5 nTPM
GTEx:1846.8 nTPM
FANTOM5:4945.5 Scaled Tags Per Million
URINARY BLADDER - SINGLE CELL RNA EXPRESSION
Explore single cell type data

URINARY BLADDER - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA045617
Urothelial cells Not detected



URINARY BLADDER - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

668.5
overview
Male, age 74
Urinary bladder sample 264
nTPM: 1301.9
Cell types%
Urothelial cells:
5

Smooth muscle cells:
60

Fibroblasts:
20

Endothelial cells:
10

Other cell types:
5

overview
Male, age 80
Urinary bladder sample 265
nTPM: 119.8
Cell types%
Urothelial cells:
10

Smooth muscle cells:
45

Fibroblasts:
15

Endothelial cells:
10

Other cell types:
20

N/A
Female, age 0.1
Urinary bladder sample 1597
nTPM: 266.1
N/A
Female, age 0.1
Urinary bladder sample 1598
nTPM: 986.3

URINARY BLADDER - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1846.8
GTEx sample id Sample description nTPM
Bladder
Average nTPM: 1846.8
Samples: 77

Max nTPM: 6783.3
Min nTPM: 81.6
Std nTPM: 1521.4
Median nTPM: 1412.0
GTEX-PLZ6-1026-SM-GQ1C8 30-39 years, male 6783.3
GTEX-T2IS-2526-SM-GRR23 20-29 years, female 6134.2
GTEX-T5JC-1126-SM-GPIA1 20-29 years, male 5257.4
GTEX-OHPK-1926-SM-H7OF2 50-59 years, female 4974.7
GTEX-P4PQ-1926-SM-GRR14 60-69 years, male 4551.8
GTEX-QXCU-2226-SM-GPI87 50-59 years, male 4144.6
GTEX-RN64-2426-SM-EZ6L2 50-59 years, male 3979.5
GTEX-RWS6-1426-SM-GPRWQ 60-69 years, female 3942.3
GTEX-TKQ2-0526-SM-GRR15 50-59 years, male 3846.6
GTEX-U3ZM-0826-SM-4DXU6 40-49 years, male 3515.6
GTEX-OOBJ-1926-SM-GRR1P 60-69 years, male 3451.8
GTEX-OIZI-1926-SM-H7OGY 40-49 years, male 3447.5
GTEX-P4QS-1926-SM-GQ1BY 60-69 years, male 3368.9
GTEX-S4P3-0826-SM-H7OF3 50-59 years, female 3234.0
GTEX-SE5C-1026-SM-4BRUG 40-49 years, female 3199.5
GTEX-OXRK-1926-SM-GRR1N 50-59 years, female 3060.5
GTEX-REY6-2026-SM-GPRYL 60-69 years, male 3051.7
GTEX-SUCS-1226-SM-GPI9A 70-79 years, male 2907.2
GTEX-QV31-0926-SM-GQ1C6 30-39 years, male 2881.5
GTEX-OIZF-1926-SM-7PBZS 60-69 years, male 2872.9
GTEX-P44H-2226-SM-E9U4P 40-49 years, male 2864.5
GTEX-QDT8-2826-SM-GOQYY 30-39 years, female 2815.2
GTEX-QDVJ-1526-SM-GPI84 50-59 years, male 2768.1
GTEX-QCQG-0826-SM-GPI8H 50-59 years, female 2755.3
GTEX-R55G-1326-SM-HAUYU 40-49 years, female 2287.0
GTEX-R55C-1226-SM-GOQY7 40-49 years, male 2225.2
GTEX-TMMY-1526-SM-4DXST 40-49 years, female 2220.0
GTEX-S95S-0626-SM-EZ6L8 60-69 years, male 2175.2
GTEX-QEG5-2326-SM-GRR2Z 20-29 years, male 2174.4
GTEX-QV44-1426-SM-GPI8D 50-59 years, male 2032.4
GTEX-QEL4-1826-SM-EZ6KU 50-59 years, male 2016.9
GTEX-S32W-1126-SM-4AD5V 50-59 years, female 1931.5
GTEX-Q734-1226-SM-GRR21 40-49 years, female 1928.9
GTEX-Q2AH-1326-SM-GPRWF 40-49 years, male 1870.8
GTEX-P78B-2126-SM-GQ1C3 40-49 years, female 1751.9
GTEX-PW2O-1026-SM-GPRWA 20-29 years, male 1619.6
GTEX-QLQW-0826-SM-H7OG2 30-39 years, male 1506.8
GTEX-PX3G-1926-SM-GQ1ED 20-29 years, female 1494.6
GTEX-RWSA-2126-SM-H7OG7 40-49 years, male 1412.0
GTEX-N7MS-2126-SM-GRR2X 60-69 years, male 1389.4
GTEX-RM2N-1026-SM-GOQY8 50-59 years, male 1370.1
GTEX-QEG4-2126-SM-GQ1CE 30-39 years, male 1353.9
GTEX-QDVN-1426-SM-GPRWL 50-59 years, male 1341.3
GTEX-T8EM-1726-SM-GPRWO 40-49 years, male 1281.5
GTEX-U4B1-1226-SM-4DXT7 40-49 years, male 1247.9
GTEX-T6MN-2226-SM-EVYAM 50-59 years, male 1163.6
GTEX-PLZ5-1326-SM-GQ1C2 50-59 years, male 1149.7
GTEX-P4QT-1926-SM-HAUYQ 50-59 years, female 1087.7
GTEX-QMRM-1326-SM-HAUYS 50-59 years, male 994.6
GTEX-N7MT-1826-SM-GQ1C9 60-69 years, female 927.3
GTEX-OIZH-1926-SM-GPRXO 50-59 years, male 828.2
GTEX-RNOR-2126-SM-EXURR 50-59 years, female 770.7
GTEX-S4Q7-0926-SM-4AD5D 20-29 years, male 717.9
GTEX-S3XE-1226-SM-4AD4L 50-59 years, male 612.7
GTEX-OHPM-1926-SM-H7OG1 50-59 years, male 574.6
GTEX-NPJ8-1126-SM-GNTAI 40-49 years, male 560.5
GTEX-PWCY-1126-SM-H7OGX 20-29 years, female 519.2
GTEX-QLQ7-1226-SM-GOQYE 60-69 years, male 511.8
GTEX-U3ZH-0826-SM-H6Q7I 30-39 years, male 510.5
GTEX-Q2AI-1026-SM-GRR3I 40-49 years, male 506.7
GTEX-O5YT-1926-SM-H6Q82 20-29 years, male 480.5
GTEX-S7SF-1126-SM-GQ1CH 20-29 years, female 458.3
GTEX-T5JW-1026-SM-EZ6LR 20-29 years, female 407.6
GTEX-R45C-2426-SM-HL11G 60-69 years, female 365.7
GTEX-P4PP-1926-SM-HAUZM 30-39 years, female 345.6
GTEX-S33H-1926-SM-EYYVH 30-39 years, male 315.3
GTEX-S4UY-0926-SM-4AD6O 40-49 years, female 298.8
GTEX-U3ZN-1226-SM-4DXUD 30-39 years, female 293.4
GTEX-SNMC-0826-SM-4DM66 20-29 years, male 217.3
GTEX-R53T-1426-SM-H7OG3 50-59 years, female 207.8
GTEX-POMQ-0926-SM-H6Q6H 20-29 years, female 200.6
GTEX-OOBK-1926-SM-HAUZL 40-49 years, male 176.1
GTEX-PWN1-1926-SM-HAUZN 40-49 years, female 152.0
GTEX-SNOS-0526-SM-4DM54 40-49 years, male 129.8
GTEX-RUSQ-1326-SM-GQ1EA 50-59 years, male 113.2
GTEX-T6MO-0926-SM-GPRWN 40-49 years, female 85.4
GTEX-OHPL-1926-SM-HAV18 60-69 years, female 81.6
Show allShow less

URINARY BLADDER - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

4945.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Bladder
Scaled Tags Per Million: 4945.5
FF:10011-101C2 55,58,79 years, mixed 4945.5

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