A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.5
nTPM
Monaco:
20.5
nTPM
Schmiedel:
25.8
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.5
HPA sample
nTPM
NK-cell nTPM: 1.6
Samples: 6
Max nTPM: 3.7
Min nTPM: 0.0
P10809_1013
1.8
P10809_1033
2.4
P10809_1052
0.2
P10809_1071
1.2
P10809_1093
0.0
P10809_1103
3.7
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
20.5
Monaco sample
nTPM
NK-cell nTPM: 20.5
Samples: 4
Max nTPM: 27.1
Min nTPM: 11.3
RHH5316_R3683
25.4
RHH5224_R3596
18.3
RHH5253_R3625
27.1
RHH5282_R3654
11.3
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
25.8
Schmiedel sample id
TPM
NK-cell TPM: 25.8
Samples: 90
Max TPM: 45.6
Min TPM: 17.2
NK_1
45.6
NK_2
37.4
NK_3
36.4
NK_4
35.3
NK_5
34.9
NK_6
33.5
NK_7
33.3
NK_8
32.1
NK_9
31.4
NK_10
31.0
NK_11
30.6
NK_12
30.4
NK_13
30.1
NK_14
29.9
NK_15
29.7
NK_16
29.5
NK_17
29.2
NK_18
29.1
NK_19
28.9
NK_20
28.8
NK_21
28.6
NK_22
28.5
NK_23
28.4
NK_24
27.9
NK_25
27.9
NK_26
27.8
NK_27
27.2
NK_28
27.1
NK_29
27.1
NK_30
26.9
NK_31
26.7
NK_32
26.6
NK_33
26.3
NK_34
26.3
NK_35
26.2
NK_36
26.0
NK_37
25.7
NK_38
25.7
NK_39
25.4
NK_40
25.1
NK_41
25.0
NK_42
25.0
NK_43
25.0
NK_44
24.8
NK_45
24.7
NK_46
24.7
NK_47
24.6
NK_48
24.6
NK_49
24.5
NK_50
24.5
NK_51
24.4
NK_52
24.1
NK_53
24.0
NK_54
24.0
NK_55
23.9
NK_56
23.8
NK_57
23.7
NK_58
23.6
NK_59
23.6
NK_60
23.5
NK_61
23.5
NK_62
23.4
NK_63
23.1
NK_64
23.1
NK_65
23.0
NK_66
22.9
NK_67
22.8
NK_68
22.8
NK_69
22.8
NK_70
22.7
NK_71
22.7
NK_72
22.6
NK_73
22.3
NK_74
22.0
NK_75
21.8
NK_76
21.8
NK_77
21.6
NK_78
21.6
NK_79
21.6
NK_80
21.5
NK_81
21.0
NK_82
20.9
NK_83
20.9
NK_84
20.4
NK_85
20.1
NK_86
20.0
NK_87
19.8
NK_88
19.7
NK_89
18.7
NK_90
17.2
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