A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4.8
nTPM
Monaco:
22.0
nTPM
Schmiedel:
22.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4.8
HPA sample
nTPM
Classical monocyte nTPM: 3.2
Samples: 6
Max nTPM: 4.1
Min nTPM: 1.6
P10809_1003
1.6
P10809_1020
2.2
P10809_1039
4.1
P10809_1058
4.0
P10809_1080
3.0
P10809_1107
4.0
Intermediate monocyte nTPM: 1.3
Samples: 6
Max nTPM: 2.5
Min nTPM: 0.6
P10809_1004
1.9
P10809_1023
0.6
P10809_1042
1.4
P10809_1061
0.9
P10809_1081
2.5
P10809_1108
0.8
Non-classical monocyte nTPM: 4.8
Samples: 5
Max nTPM: 18.5
Min nTPM: 1.0
P10809_1005
1.1
P10809_1053
1.2
P10809_1072
18.5
P10809_1082
2.0
P10809_1109
1.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
22.0
Monaco sample
nTPM
Classical monocyte nTPM: 22.0
Samples: 4
Max nTPM: 30.9
Min nTPM: 13.3
RHH5313_R3680
22.3
RHH5221_R3593
21.4
RHH5250_R3622
13.3
RHH5279_R3651
30.9
Intermediate monocyte nTPM: 12.5
Samples: 4
Max nTPM: 14.7
Min nTPM: 7.2
RHH5314_R3681
7.2
RHH5222_R3594
14.6
RHH5251_R3623
14.7
RHH5280_R3652
13.5
Non-classical monocyte nTPM: 12.1
Samples: 4
Max nTPM: 13.2
Min nTPM: 11.1
RHH5315_R3682
11.8
RHH5223_R3595
12.2
RHH5252_R3624
11.1
RHH5281_R3653
13.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
22.5
Schmiedel sample id
TPM
Classical monocyte TPM: 22.5
Samples: 91
Max TPM: 44.3
Min TPM: 15.1
MONOCYTES_1
44.3
MONOCYTES_2
29.3
MONOCYTES_3
29.0
MONOCYTES_4
27.9
MONOCYTES_5
27.8
MONOCYTES_6
26.9
MONOCYTES_7
26.8
MONOCYTES_8
26.7
MONOCYTES_9
26.7
MONOCYTES_10
26.6
MONOCYTES_11
26.5
MONOCYTES_12
26.2
MONOCYTES_13
26.2
MONOCYTES_14
26.1
MONOCYTES_15
25.6
MONOCYTES_16
25.6
MONOCYTES_17
25.3
MONOCYTES_18
25.1
MONOCYTES_19
24.8
MONOCYTES_20
24.7
MONOCYTES_21
24.1
MONOCYTES_22
24.1
MONOCYTES_23
24.1
MONOCYTES_24
24.1
MONOCYTES_25
23.9
MONOCYTES_26
23.8
MONOCYTES_27
23.8
MONOCYTES_28
23.7
MONOCYTES_29
23.6
MONOCYTES_30
23.5
MONOCYTES_31
23.4
MONOCYTES_32
23.4
MONOCYTES_33
23.3
MONOCYTES_34
23.2
MONOCYTES_35
23.2
MONOCYTES_36
22.9
MONOCYTES_37
22.9
MONOCYTES_38
22.6
MONOCYTES_39
22.3
MONOCYTES_40
22.2
MONOCYTES_41
22.2
MONOCYTES_42
22.2
MONOCYTES_43
22.1
MONOCYTES_44
22.1
MONOCYTES_45
22.1
MONOCYTES_46
22.1
MONOCYTES_47
22.0
MONOCYTES_48
21.7
MONOCYTES_49
21.7
MONOCYTES_50
21.7
MONOCYTES_51
21.7
MONOCYTES_52
21.7
MONOCYTES_53
21.5
MONOCYTES_54
21.5
MONOCYTES_55
21.2
MONOCYTES_56
21.2
MONOCYTES_57
21.1
MONOCYTES_58
21.0
MONOCYTES_59
20.9
MONOCYTES_60
20.8
MONOCYTES_61
20.8
MONOCYTES_62
20.7
MONOCYTES_63
20.5
MONOCYTES_64
20.4
MONOCYTES_65
20.3
MONOCYTES_66
20.3
MONOCYTES_67
20.2
MONOCYTES_68
20.1
MONOCYTES_69
20.1
MONOCYTES_70
20.1
MONOCYTES_71
19.9
MONOCYTES_72
19.9
MONOCYTES_73
19.9
MONOCYTES_74
19.8
MONOCYTES_75
19.7
MONOCYTES_76
19.4
MONOCYTES_77
19.3
MONOCYTES_78
19.3
MONOCYTES_79
19.3
MONOCYTES_80
19.2
MONOCYTES_81
19.1
MONOCYTES_82
19.1
MONOCYTES_83
19.0
MONOCYTES_84
19.0
MONOCYTES_85
18.9
MONOCYTES_86
18.6
MONOCYTES_87
18.4
MONOCYTES_88
18.2
MONOCYTES_89
18.2
MONOCYTES_90
17.8
MONOCYTES_91
15.1
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Non-classical monocyte TPM: 14.7
Samples: 90
Max TPM: 24.6
Min TPM: 10.9
M2_1
24.6
M2_2
20.7
M2_3
20.4
M2_4
19.3
M2_5
19.1
M2_6
18.0
M2_7
17.2
M2_8
17.2
M2_9
17.1
M2_10
17.0
M2_11
16.9
M2_12
16.8
M2_13
16.8
M2_14
16.8
M2_15
16.3
M2_16
16.1
M2_17
16.0
M2_18
16.0
M2_19
16.0
M2_20
15.9
M2_21
15.9
M2_22
15.8
M2_23
15.8
M2_24
15.7
M2_25
15.7
M2_26
15.6
M2_27
15.5
M2_28
15.5
M2_29
15.4
M2_30
15.3
M2_31
15.3
M2_32
15.2
M2_33
15.2
M2_34
14.9
M2_35
14.9
M2_36
14.9
M2_37
14.8
M2_38
14.8
M2_39
14.7
M2_40
14.7
M2_41
14.7
M2_42
14.7
M2_43
14.6
M2_44
14.6
M2_45
14.5
M2_46
14.5
M2_47
14.3
M2_48
14.3
M2_49
14.1
M2_50
14.1
M2_51
14.0
M2_52
13.9
M2_53
13.9
M2_54
13.9
M2_55
13.8
M2_56
13.8
M2_57
13.8
M2_58
13.6
M2_59
13.6
M2_60
13.6
M2_61
13.5
M2_62
13.4
M2_63
13.4
M2_64
13.3
M2_65
13.2
M2_66
13.1
M2_67
13.1
M2_68
13.1
M2_69
13.1
M2_70
13.1
M2_71
13.1
M2_72
13.0
M2_73
13.0
M2_74
13.0
M2_75
12.9
M2_76
12.8
M2_77
12.7
M2_78
12.7
M2_79
12.6
M2_80
12.5
M2_81
12.4
M2_82
12.3
M2_83
12.2
M2_84
12.0
M2_85
11.9
M2_86
11.8
M2_87
11.5
M2_88
11.1
M2_89
11.0
M2_90
10.9
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