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  • PSMD4
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:132.0 nTPM
HPA Brain:96.1 nTPM
GTEx:132.0 nTPM
FANTOM5:49.6 Scaled Tags Per Million
Pig:102.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

96.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 93.7
1981 Female, age 72, midline 107.3
2194 Female, age 79, both hemispheres 102.6
2565 Male, age 75, midline 92.0
2816 Male, age 47, midline 83.9
2048 Male, age 55, midline 82.6
Cervical spinal cord, dorsal horn
nTPM: 86.7
2173 Female, age 72, unknown 118.2
2069 Male, age 47, both hemispheres 89.7
2296 Male, age 66, both hemispheres 88.9
2297 Male, age 75, both hemispheres 76.3
2721 Male, age 90, both hemispheres 75.2
1877 Male, age 55, unknown 71.9
Cervical spinal cord, ventral horn
nTPM: 96.1
2480 Male, age 75, both hemispheres 112.2
2068 Male, age 55, unknown 100.4
2809 Male, age 90, both hemispheres 98.1
2820 Female, age 79, both hemispheres 90.3
2098 Female, age 72, unknown 89.9
2295 Male, age 66, both hemispheres 85.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

132.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 132.0
Samples: 204

Max nTPM: 242.7
Min nTPM: 76.1
Std nTPM: 29.9
Median nTPM: 128.1
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 242.7
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 238.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 216.9
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 211.3
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 203.5
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 200.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 198.3
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 195.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 195.5
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 195.2
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 190.6
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 188.2
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 188.0
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 186.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 184.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 178.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 177.2
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 175.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 173.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 172.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 172.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 170.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 169.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 169.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 169.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 168.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 167.5
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 167.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 166.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 163.5
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 163.4
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 162.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 159.8
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 159.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 159.5
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 158.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 156.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 154.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 154.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 153.8
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 153.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 153.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 153.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 152.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 151.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 149.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 149.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 149.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 149.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 148.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 148.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 148.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 147.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 147.4
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 145.9
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 145.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 144.3
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 144.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 142.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 142.3
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 141.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 141.8
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 141.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 141.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 141.0
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 140.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 140.2
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 140.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 139.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 138.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 137.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 137.7
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 137.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 136.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 136.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 136.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 135.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 135.4
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 135.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 134.7
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 134.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 133.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 132.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 131.7
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 131.2
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 131.2
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 130.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 130.3
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 130.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 130.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 129.5
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 129.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 129.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 129.0
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 128.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 128.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 128.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 128.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 128.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 128.3
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 128.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 128.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 128.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 127.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 126.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 126.4
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 125.5
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 125.4
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 125.3
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 124.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 124.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 124.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 124.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 124.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 124.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 123.8
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 122.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 121.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 121.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 121.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 120.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 120.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 120.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 120.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 120.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 120.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 120.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 119.9
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 119.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 119.6
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 119.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 119.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 118.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 117.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 116.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 116.6
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 116.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 116.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 115.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 115.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 115.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 115.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 114.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 114.0
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 113.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 113.2
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 112.6
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 112.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 111.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 111.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 111.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 111.5
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 111.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 110.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 110.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 110.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 109.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 109.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 109.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 108.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 108.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 107.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 106.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 106.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 106.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 105.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 105.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 105.4
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 105.2
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 105.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 105.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 104.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 103.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 102.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 102.5
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 102.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 101.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 100.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 100.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 100.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 100.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 99.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 99.4
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 99.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 98.9
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 98.8
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 98.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 98.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 97.6
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 96.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 96.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 96.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 95.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 95.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 94.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 91.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 87.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 86.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 86.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 84.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 82.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 80.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 77.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 76.1
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

49.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 49.6
FF:10159-103A6 76 years, female 51.8
FF:10181-103D1 60 years, female 47.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

102.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 95.2
Samples: 4

Max nTPM: 103.6
Min nTPM: 86.8
Sample A Female 98.3
Sample B Female 86.8
Sample C Male 91.9
Sample D Male 103.6
Ventral spinal cord
nTPM: 102.0
Samples: 4

Max nTPM: 106.6
Min nTPM: 94.2
Sample A Female 94.2
Sample B Female 105.9
Sample C Male 106.6
Sample D Male 101.3

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