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  • PSMD4
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:181.9 nTPM
HPA Brain:82.2 nTPM
GTEx:181.9 nTPM
FANTOM5:70.6 Scaled Tags Per Million
Pig:59.2 nTPM
Mouse:133.3 nTPM
Allen mouse:8.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

82.2
Sample id Sample description nTPM
Amygdala
nTPM: 79.7
2814 Male, age 76, right hemisphere 85.0
2695 Female, age 67, right hemisphere 84.8
2514 Male, age 75, right hemisphere 78.4
1987 Female, age 91, left hemisphere 76.6
2517 Female, age 94, left hemisphere 73.5
Basal amygdala
nTPM: 75.2
2609 Male, age 75, right hemisphere 80.5
2243 Female, age 91, right hemisphere 79.1
2685 Female, age 94, left hemisphere 76.8
2110 Male, age 80, left hemisphere 75.8
1955 Male, age 76, both hemispheres 70.2
2827 Female, age 67, right hemisphere 68.9
Central amygdala
nTPM: 82.2
2826 Female, age 94, left hemisphere 100.8
1905 Male, age 76, both hemispheres 81.5
2515 Male, age 75, right hemisphere 80.8
2239 Male, age 80, left hemisphere 78.1
2701 Female, age 91, right hemisphere 70.0
Corticomedial amygdala
nTPM: 76.3
2428 Male, age 75, right hemisphere 84.8
2829 Male, age 80, left hemisphere 82.5
2242 Female, age 91, right hemisphere 77.8
2429 Female, age 94, left hemisphere 76.1
2535 Female, age 67, right hemisphere 68.6
2240 Male, age 76, both hemispheres 68.0
Lateral amygdala
nTPM: 81.0
1883 Male, age 76, both hemispheres 88.2
2830 Female, age 67, right hemisphere 88.0
2534 Female, age 94, left hemisphere 85.2
2516 Male, age 75, right hemisphere 83.6
2255 Female, age 91, right hemisphere 71.0
2256 Male, age 80, left hemisphere 69.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

181.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 181.9
Samples: 181

Max nTPM: 384.6
Min nTPM: 105.7
Std nTPM: 48.5
Median nTPM: 171.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 384.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 347.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 336.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 333.4
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 325.2
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 313.1
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 307.2
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 303.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 292.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 275.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 274.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 262.1
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 260.8
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 257.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 251.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 249.6
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 249.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 248.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 246.2
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 245.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 242.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 242.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 235.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 232.5
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 231.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 224.1
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 221.0
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 219.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 219.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 217.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 216.9
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 213.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 212.3
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 211.0
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 209.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 209.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 209.1
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 206.6
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 206.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 205.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 205.9
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 205.5
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 204.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 202.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 202.1
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 200.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 200.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 199.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 197.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 196.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 196.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 195.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 194.8
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 194.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 193.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 193.7
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 193.1
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 192.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 192.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 191.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 190.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 190.1
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 189.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 188.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 188.5
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 187.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 186.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 186.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 185.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 185.4
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 185.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 184.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 183.5
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 181.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 181.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 179.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 178.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 178.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 177.5
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 175.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 175.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 174.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 174.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 174.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 173.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 173.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 172.3
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 172.2
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 171.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 171.2
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 171.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 170.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 170.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 170.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 169.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 169.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 169.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 168.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 168.4
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 168.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 168.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 167.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 167.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 166.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 165.9
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 164.9
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 164.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 164.3
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 163.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 161.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 161.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 160.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 158.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 158.2
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 158.1
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 157.8
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 157.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 156.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 156.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 155.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 155.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 155.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 154.3
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 154.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 152.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 152.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 152.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 151.3
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 150.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 150.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 150.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 149.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 149.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 149.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 148.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 148.3
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 148.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 147.7
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 147.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 146.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 146.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 146.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 146.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 145.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 145.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 143.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 143.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 142.3
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 141.5
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 141.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 140.8
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 139.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 139.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 138.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 137.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 136.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 136.6
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 136.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 136.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 135.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 134.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 134.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 133.9
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 131.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 131.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 130.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 130.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 129.9
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 129.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 125.7
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 125.7
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 125.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 125.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 124.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 122.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 121.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 121.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 118.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 117.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 115.8
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 105.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

70.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 70.6
FF:10151-102I7 76 years, female 70.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

59.2
Pig sample Sample description nTPM
Amygdala
nTPM: 59.3
Samples: 4

Max nTPM: 76.9
Min nTPM: 46.6
Sample A Female 76.9
Sample B Female 60.5
Sample C Male 53.0
Sample D Male 46.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

133.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 133.3
Samples: 4

Max nTPM: 139.9
Min nTPM: 128.6
Sample A Male 133.0
Sample B Male 139.9
Sample C Female 131.6
Sample D Female 128.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

8.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 8.9
2503 Antisense, RP_040407_02_H10, Mouse strain C57BL/6J (56 days, male) 8.9
2504 Antisense, RP_040407_02_H10, Mouse strain C57BL/6J (56 days, male) 4.4

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