MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:73.5 nTPM
HPA Brain:76.5 nTPM
GTEx:73.5 nTPM
FANTOM5:26.3 Scaled Tags Per Million
Pig:26.9 nTPM
Mouse:11.8 nTPM
Allen mouse:0.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 76.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 62.9
2586 Male, age 75, left hemisphere 100.3
2828 Female, age 72, unknown 87.5
2666 Male, age 74, left hemisphere 85.0
1827 Male, age 72, unknown 60.5
1833 Male, age 53, unknown 59.8
2411 Female, age 72, unknown 50.4
1830 Male, age 51, unknown 48.9
2219 Male, age 76, both hemispheres 47.6
2019 Male, age 18, unknown 44.7
1870 Female, age 42, unknown 44.2
Dorsal raphe nucleus
nTPM: 56.2
2047 Male, age 72, unknown 69.1
1828 Male, age 53, unknown 61.6
2298 Female, age 72, unknown 52.5
2016 Female, age 72, unknown 51.6
2750 Male, age 76, both hemispheres 46.1
Inferior colliculus
nTPM: 60.4
1848 Female, age 42, unknown 78.7
2849 Male, age 72, unknown 59.7
1890 Male, age 53, unknown 59.0
2097 Female, age 72, unknown 44.1
Median raphe nucleus
nTPM: 31.6
2220 Male, age 76, midline 31.6
Periaquaductal grey, anterior
nTPM: 64.3
1947 Male, age 18, unknown 74.8
2502 Female, age 75, unknown 59.9
1795 Male, age 51, unknown 58.1
Periaquaductal grey, dorsal
nTPM: 49.5
1840 Male, age 53, unknown 60.7
2464 Female, age 72, unknown 59.8
2850 Male, age 76, both hemispheres 43.1
1831 Male, age 72, unknown 34.6
Periaquaductal grey, lateral
nTPM: 45.6
2140 Male, age 76, both hemispheres 54.8
2053 Male, age 18, unknown 50.6
2272 Male, age 74, both hemispheres 31.2
Pretectal area
nTPM: 58.3
1816 Male, age 51, unknown 86.1
1817 Female, age 42, unknown 77.9
1944 Female, age 72, unknown 67.6
2667 Female, age 75, unknown 66.7
1815 Male, age 53, unknown 63.3
2007 Male, age 72, unknown 61.7
2825 Male, age 18, unknown 56.9
2316 Male, age 76, right hemisphere 54.8
2224 Female, age 72, unknown 41.1
2407 Male, age 75, both hemispheres 33.1
2273 Male, age 74, both hemispheres 31.8
Red nucleus
nTPM: 75.4
2588 Male, age 74, left hemisphere 91.9
2503 Female, age 72, unknown 90.7
2769 Male, age 72, unknown 84.4
1954 Female, age 42, unknown 81.3
1904 Male, age 53, unknown 80.8
2823 Male, age 76, right hemisphere 80.1
2227 Male, age 72, unknown 79.9
1821 Female, age 72, unknown 75.2
2725 Female, age 75, unknown 68.4
1865 Male, age 51, unknown 67.5
2584 Male, age 75, left hemisphere 57.6
2785 Male, age 18, unknown 46.7
Substantia nigra
nTPM: 76.5
1916 Female, age 42, unknown 111.5
2699 Male, age 18, unknown 92.8
1851 Male, age 51, unknown 84.7
2665 Male, age 74, both hemispheres 81.5
2590 Female, age 75, unknown 74.5
2409 Female, age 72, unknown 73.8
1889 Female, age 72, unknown 71.6
2241 Male, age 72, unknown 66.8
2583 Male, age 75, right hemisphere 64.0
1941 Male, age 53, unknown 43.9
Superior colliculus
nTPM: 58.1
2087 Female, age 72, unknown 79.1
2261 Male, age 18, unknown 71.8
1796 Male, age 53, unknown 64.6
1895 Male, age 76, right hemisphere 59.0
1839 Male, age 51, unknown 56.3
2668 Female, age 75, unknown 55.3
1995 Male, age 72, unknown 52.0
2664 Male, age 75, both hemispheres 50.7
2587 Male, age 74, left hemisphere 50.2
1913 Female, age 42, unknown 42.4
Ventral tegmental area
nTPM: 55.6
1915 Female, age 42, unknown 76.1
2410 Female, age 72, unknown 68.7
2218 Male, age 76, both hemispheres 50.7
2021 Male, age 53, unknown 48.0
1942 Male, age 51, unknown 46.8
2223 Female, age 72, unknown 43.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 73.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 73.5
Samples: 183

Max nTPM: 234.3
Min nTPM: 7.6
Std nTPM: 46.0
Median nTPM: 60.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 234.3
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 210.6
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 204.3
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 192.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 192.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 192.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 189.9
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 183.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 180.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 179.8
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 178.5
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 26.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 26.3
FF:10158-103A5 76 years, female 26.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 26.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 23.9
Samples: 4

Max nTPM: 28.0
Min nTPM: 19.0
Sample A Female 20.7
Sample B Female 28.0
Sample C Male 19.0
Sample D Male 27.7
Midbrain
nTPM: 20.5
Samples: 4

Max nTPM: 24.9
Min nTPM: 17.2
Sample A Female 24.9
Sample B Female 21.9
Sample C Male 17.2
Sample D Male 18.0
Periaqueductal gray
nTPM: 15.2
Samples: 3

Max nTPM: 18.4
Min nTPM: 13.1
Sample B Female 18.4
Sample C Male 14.1
Sample D Male 13.1
Superior colliculi
nTPM: 26.9
Samples: 4

Max nTPM: 40.0
Min nTPM: 17.5
Sample A Female 28.7
Sample B Female 40.0
Sample C Male 17.5
Sample D Male 21.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 11.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 11.8
Samples: 4

Max nTPM: 12.6
Min nTPM: 10.8
Sample A Male 12.6
Sample B Male 11.7
Sample C Female 10.8
Sample D Female 11.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
69014524 Antisense, RP_050310_01_C07, Mouse strain C57BL/6J (56 days, male) 0.9

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo