MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.5 nTPM
HPA Brain:54.0 nTPM
GTEx:14.5 nTPM
FANTOM5:66.3 Scaled Tags Per Million
Pig:31.9 nTPM
Mouse:41.3 nTPM
Allen mouse:1.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 54.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 49.2
2586 Male, age 75, left hemisphere 60.9
2019 Male, age 18, unknown 55.6
2411 Female, age 72, unknown 54.7
2666 Male, age 74, left hemisphere 49.5
2219 Male, age 76, both hemispheres 47.0
1830 Male, age 51, unknown 46.8
2828 Female, age 72, unknown 46.2
1833 Male, age 53, unknown 45.6
1827 Male, age 72, unknown 42.9
1870 Female, age 42, unknown 42.2
Dorsal raphe nucleus
nTPM: 30.7
2750 Male, age 76, both hemispheres 42.2
1828 Male, age 53, unknown 31.5
2047 Male, age 72, unknown 29.0
2016 Female, age 72, unknown 27.6
2298 Female, age 72, unknown 23.2
Inferior colliculus
nTPM: 30.9
1890 Male, age 53, unknown 34.1
1848 Female, age 42, unknown 32.4
2849 Male, age 72, unknown 29.8
2097 Female, age 72, unknown 27.4
Median raphe nucleus
nTPM: 28.0
2220 Male, age 76, midline 28.0
Periaquaductal grey, anterior
nTPM: 32.2
1947 Male, age 18, unknown 32.8
1795 Male, age 51, unknown 32.5
2502 Female, age 75, unknown 31.5
Periaquaductal grey, dorsal
nTPM: 24.1
2464 Female, age 72, unknown 31.9
1831 Male, age 72, unknown 29.3
1840 Male, age 53, unknown 20.7
2850 Male, age 76, both hemispheres 14.6
Periaquaductal grey, lateral
nTPM: 24.4
2053 Male, age 18, unknown 31.4
2272 Male, age 74, both hemispheres 24.9
2140 Male, age 76, both hemispheres 16.8
Pretectal area
nTPM: 34.9
2407 Male, age 75, both hemispheres 50.9
2007 Male, age 72, unknown 47.3
1815 Male, age 53, unknown 42.2
1817 Female, age 42, unknown 40.0
1816 Male, age 51, unknown 34.5
2316 Male, age 76, right hemisphere 34.5
2825 Male, age 18, unknown 33.3
1944 Female, age 72, unknown 31.5
2667 Female, age 75, unknown 26.0
2224 Female, age 72, unknown 23.2
2273 Male, age 74, both hemispheres 21.1
Red nucleus
nTPM: 54.0
2584 Male, age 75, left hemisphere 84.6
2588 Male, age 74, left hemisphere 69.5
1865 Male, age 51, unknown 54.9
1904 Male, age 53, unknown 53.9
2785 Male, age 18, unknown 53.9
2769 Male, age 72, unknown 51.4
1821 Female, age 72, unknown 49.7
2227 Male, age 72, unknown 49.4
2823 Male, age 76, right hemisphere 47.4
2725 Female, age 75, unknown 44.7
2503 Female, age 72, unknown 44.4
1954 Female, age 42, unknown 44.1
Substantia nigra
nTPM: 43.5
2583 Male, age 75, right hemisphere 61.7
1941 Male, age 53, unknown 49.8
1851 Male, age 51, unknown 47.0
2590 Female, age 75, unknown 45.5
2665 Male, age 74, both hemispheres 43.7
1916 Female, age 42, unknown 42.0
1889 Female, age 72, unknown 41.2
2409 Female, age 72, unknown 35.6
2699 Male, age 18, unknown 34.6
2241 Male, age 72, unknown 33.5
Superior colliculus
nTPM: 39.5
2668 Female, age 75, unknown 57.6
2587 Male, age 74, left hemisphere 42.0
1895 Male, age 76, right hemisphere 41.8
2664 Male, age 75, both hemispheres 41.1
1995 Male, age 72, unknown 38.0
1796 Male, age 53, unknown 37.8
1913 Female, age 42, unknown 37.5
1839 Male, age 51, unknown 37.2
2261 Male, age 18, unknown 31.4
2087 Female, age 72, unknown 30.4
Ventral tegmental area
nTPM: 40.5
2223 Female, age 72, unknown 57.8
2410 Female, age 72, unknown 47.8
1915 Female, age 42, unknown 37.9
1942 Male, age 51, unknown 36.8
2218 Male, age 76, both hemispheres 34.5
2021 Male, age 53, unknown 28.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 14.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.5
Samples: 183

Max nTPM: 53.2
Min nTPM: 1.4
Std nTPM: 8.0
Median nTPM: 12.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 53.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 50.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 38.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 38.1
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 33.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 32.9
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 29.7
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 29.7
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 28.7
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 28.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 28.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 66.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 66.3
FF:10158-103A5 76 years, female 66.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 31.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 23.5
Samples: 4

Max nTPM: 30.0
Min nTPM: 14.2
Sample A Female 30.0
Sample B Female 14.2
Sample C Male 22.7
Sample D Male 27.1
Midbrain
nTPM: 31.9
Samples: 4

Max nTPM: 45.4
Min nTPM: 22.3
Sample A Female 45.4
Sample B Female 22.3
Sample C Male 36.1
Sample D Male 23.9
Periaqueductal gray
nTPM: 16.7
Samples: 3

Max nTPM: 18.3
Min nTPM: 15.9
Sample B Female 18.3
Sample C Male 15.9
Sample D Male 15.9
Superior colliculi
nTPM: 27.2
Samples: 4

Max nTPM: 37.1
Min nTPM: 13.5
Sample A Female 28.5
Sample B Female 13.5
Sample C Male 37.1
Sample D Male 29.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 41.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 41.3
Samples: 4

Max nTPM: 42.9
Min nTPM: 39.2
Sample A Male 39.2
Sample B Male 41.4
Sample C Female 42.9
Sample D Female 41.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.5
69444855 Antisense, RP_050414_04_G06, Mouse strain C57BL/6J (56 days, male) 2.8
72128774 Antisense, RP_051017_04_D02, Mouse strain C57BL/6J (56 days, male) 0.2

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