We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
U2AF1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • U2AF1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:32.0 nTPM
FANTOM5:9.1 Scaled Tags Per Million
Pig:38.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA044833Antibody HPA052083
Glial cells HighMedium
Neuronal cells HighHigh





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

32.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 32.0
Samples: 300

Max nTPM: 131.3
Min nTPM: 0.0
Std nTPM: 23.2
Median nTPM: 30.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 131.3
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 127.6
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 106.4
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 104.3
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 102.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 87.5
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 87.0
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 82.7
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 80.9
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 79.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 76.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 74.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 73.4
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 72.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 70.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 69.8
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 68.3
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 67.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 67.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 67.4
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 66.2
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 66.2
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 64.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 64.0
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 63.1
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 63.1
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 62.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 62.1
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 60.6
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 60.1
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 59.8
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 58.8
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 58.7
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 58.4
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 58.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 57.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 57.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 57.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 57.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 56.9
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 56.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 56.4
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 56.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 55.9
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 55.8
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 55.7
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 55.5
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 54.9
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 54.3
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 54.2
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 53.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 53.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 53.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 52.6
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 51.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 51.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 50.8
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 50.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 49.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 49.6
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 49.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 49.6
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 49.4
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 49.3
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 49.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 49.3
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 49.1
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 48.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 48.0
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 48.0
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 47.5
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 47.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 47.2
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 47.0
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 46.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 46.6
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 46.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 46.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 46.0
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 45.9
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 45.8
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 45.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 45.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 44.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 44.4
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 44.4
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 44.2
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 44.2
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 44.0
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 43.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 43.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 43.2
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 43.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 42.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 42.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 42.5
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 41.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 41.6
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 41.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 41.2
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 41.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 40.6
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 40.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 40.4
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 40.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 39.8
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 39.5
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 39.1
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 39.1
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 38.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 38.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 38.5
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 37.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 37.6
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 37.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 37.4
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 37.4
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 37.2
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 36.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 36.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 36.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 36.5
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 36.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 36.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 36.1
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 35.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 35.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 35.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 35.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 34.8
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 34.6
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 34.5
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 34.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 34.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 34.1
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 33.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 33.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 32.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 32.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 31.8
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 31.6
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 31.5
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 31.5
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 30.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 30.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 30.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 30.5
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 30.4
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 30.2
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 30.1
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 29.8
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 29.5
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 29.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 29.3
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 29.0
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 28.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 28.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 28.4
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 28.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 28.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 28.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 28.0
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 27.4
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 27.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 26.9
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 26.5
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 26.5
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 26.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 26.4
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 26.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 25.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 25.7
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 25.7
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 25.2
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 25.0
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 24.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 24.8
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 24.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 24.6
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 24.6
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 24.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 24.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 24.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 23.9
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 23.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 23.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 23.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 22.8
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 22.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 22.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 22.4
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 22.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 22.3
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 22.0
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 21.5
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 21.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 21.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 21.0
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 20.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 20.6
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 19.9
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 19.6
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 18.9
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 18.9
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 18.8
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 18.5
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 17.3
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 16.8
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 16.6
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 16.2
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 16.2
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 15.7
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 14.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 14.6
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 14.2
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 14.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 13.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 13.2
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 12.7
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 12.6
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 11.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 11.2
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 10.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 9.8
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 9.7
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 9.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 9.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 9.3
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 9.2
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 9.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 9.0
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 9.0
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 8.9
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 8.8
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 8.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 8.7
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 8.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 8.5
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 8.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 7.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 7.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 7.7
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 7.2
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 7.1
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 6.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 6.7
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 6.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 6.4
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 6.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 5.9
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 5.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 5.8
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 5.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 5.7
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 5.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 5.6
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 5.6
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 5.5
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 5.4
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 5.4
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 5.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 5.3
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 5.3
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 5.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 5.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 5.0
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 4.9
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 4.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 4.7
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 4.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 4.4
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 4.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 4.1
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 4.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 4.0
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 3.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 3.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 3.7
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 3.6
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 3.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 3.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 3.3
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 3.2
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 3.1
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 2.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 2.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 2.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 2.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 2.4
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 2.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 2.1
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 2.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 2.0
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 2.0
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 1.0
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 1.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 0.8
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 0.2
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 0.0
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 0.0
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

9.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 9.1
FF:10164-103B2 76 years, female 9.1

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

38.0
Pig sample Sample description nTPM
Caudate
nTPM: 38.0
Samples: 4

Max nTPM: 44.2
Min nTPM: 33.5
Sample A Female 34.9
Sample B Female 39.4
Sample C Male 44.2
Sample D Male 33.5

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo