MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:35.3 nTPM
HPA Brain:158.4 nTPM
GTEx:35.3 nTPM
FANTOM5:58.2 Scaled Tags Per Million
Pig:38.5 nTPM
Mouse:91.5 nTPM
Allen mouse:8.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 158.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 136.7
2586 Male, age 75, left hemisphere 181.4
2666 Male, age 74, left hemisphere 171.7
1827 Male, age 72, unknown 168.9
2828 Female, age 72, unknown 168.3
2219 Male, age 76, both hemispheres 122.6
2019 Male, age 18, unknown 119.1
2411 Female, age 72, unknown 119.0
1870 Female, age 42, unknown 108.3
1833 Male, age 53, unknown 107.9
1830 Male, age 51, unknown 99.6
Dorsal raphe nucleus
nTPM: 114.3
2298 Female, age 72, unknown 124.4
2047 Male, age 72, unknown 123.5
1828 Male, age 53, unknown 113.1
2016 Female, age 72, unknown 108.0
2750 Male, age 76, both hemispheres 102.8
Inferior colliculus
nTPM: 123.5
2097 Female, age 72, unknown 133.8
1848 Female, age 42, unknown 127.6
2849 Male, age 72, unknown 119.7
1890 Male, age 53, unknown 112.7
Median raphe nucleus
nTPM: 115.9
2220 Male, age 76, midline 115.9
Periaquaductal grey, anterior
nTPM: 158.4
1947 Male, age 18, unknown 175.7
2502 Female, age 75, unknown 152.4
1795 Male, age 51, unknown 147.0
Periaquaductal grey, dorsal
nTPM: 113.5
1840 Male, age 53, unknown 139.8
2464 Female, age 72, unknown 124.3
1831 Male, age 72, unknown 104.2
2850 Male, age 76, both hemispheres 85.7
Periaquaductal grey, lateral
nTPM: 94.1
2053 Male, age 18, unknown 104.8
2140 Male, age 76, both hemispheres 101.6
2272 Male, age 74, both hemispheres 75.9
Pretectal area
nTPM: 135.0
1816 Male, age 51, unknown 205.8
2007 Male, age 72, unknown 175.1
1944 Female, age 72, unknown 154.9
1817 Female, age 42, unknown 154.8
1815 Male, age 53, unknown 146.1
2667 Female, age 75, unknown 121.1
2825 Male, age 18, unknown 117.8
2407 Male, age 75, both hemispheres 113.5
2224 Female, age 72, unknown 109.8
2316 Male, age 76, right hemisphere 109.3
2273 Male, age 74, both hemispheres 77.0
Red nucleus
nTPM: 110.8
2588 Male, age 74, left hemisphere 150.5
2584 Male, age 75, left hemisphere 134.5
2725 Female, age 75, unknown 119.2
1954 Female, age 42, unknown 116.8
2785 Male, age 18, unknown 113.3
1821 Female, age 72, unknown 107.6
2769 Male, age 72, unknown 107.1
2503 Female, age 72, unknown 104.3
2227 Male, age 72, unknown 104.0
1904 Male, age 53, unknown 91.8
2823 Male, age 76, right hemisphere 90.7
1865 Male, age 51, unknown 90.2
Substantia nigra
nTPM: 141.5
1916 Female, age 42, unknown 189.7
2665 Male, age 74, both hemispheres 184.0
1889 Female, age 72, unknown 152.4
1851 Male, age 51, unknown 149.0
1941 Male, age 53, unknown 139.0
2241 Male, age 72, unknown 138.4
2590 Female, age 75, unknown 124.3
2583 Male, age 75, right hemisphere 120.5
2699 Male, age 18, unknown 110.3
2409 Female, age 72, unknown 107.1
Superior colliculus
nTPM: 132.7
2664 Male, age 75, both hemispheres 178.0
1796 Male, age 53, unknown 159.4
2261 Male, age 18, unknown 156.3
2087 Female, age 72, unknown 154.8
2668 Female, age 75, unknown 148.4
1839 Male, age 51, unknown 123.8
1895 Male, age 76, right hemisphere 117.7
2587 Male, age 74, left hemisphere 115.4
1913 Female, age 42, unknown 89.7
1995 Male, age 72, unknown 83.9
Ventral tegmental area
nTPM: 123.9
1915 Female, age 42, unknown 137.9
2410 Female, age 72, unknown 136.0
1942 Male, age 51, unknown 132.4
2218 Male, age 76, both hemispheres 131.0
2021 Male, age 53, unknown 115.6
2223 Female, age 72, unknown 90.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 35.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 35.3
Samples: 183

Max nTPM: 72.3
Min nTPM: 9.9
Std nTPM: 14.1
Median nTPM: 33.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 72.3
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 67.7
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 64.5
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 62.6
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 61.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 61.4
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 61.1
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 60.3
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 60.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 59.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 58.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 58.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 58.2
FF:10158-103A5 76 years, female 58.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 38.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 30.9
Samples: 4

Max nTPM: 43.8
Min nTPM: 16.1
Sample A Female 43.8
Sample B Female 23.9
Sample C Male 39.6
Sample D Male 16.1
Midbrain
nTPM: 35.4
Samples: 4

Max nTPM: 50.3
Min nTPM: 12.5
Sample A Female 12.5
Sample B Female 29.2
Sample C Male 50.3
Sample D Male 49.6
Periaqueductal gray
nTPM: 30.4
Samples: 3

Max nTPM: 34.8
Min nTPM: 25.0
Sample B Female 31.5
Sample C Male 34.8
Sample D Male 25.0
Superior colliculi
nTPM: 38.5
Samples: 4

Max nTPM: 50.1
Min nTPM: 24.8
Sample A Female 38.9
Sample B Female 24.8
Sample C Male 40.3
Sample D Male 50.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 91.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 91.5
Samples: 4

Max nTPM: 99.4
Min nTPM: 85.6
Sample A Male 85.6
Sample B Male 87.3
Sample C Female 99.4
Sample D Female 93.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 8.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.1
68445997 Antisense, RP_050113_01_D01, Mouse strain C57BL/6J (56 days, male) 18.5
70919322 Antisense, RP_050713_01_B02, Mouse strain C57BL/6J (56 days, male) 4.7
70723670 Antisense, RP_050705_01_E12, Mouse strain C57BL/6J (56 days, male) 1.3
73512188 Antisense, RP_050705_01_E12, Mouse strain C57BL/6J (56 days, male) 0.8

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