HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:201.1 nTPM
HPA Brain:62.6 nTPM
GTEx:201.1 nTPM
FANTOM5:242.4 Scaled Tags Per Million
Pig:94.4 nTPM
Mouse:80.7 nTPM
Allen mouse:0.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA017380Antibody HPA058557Antibody CAB047320
Glial cells Not detectedNot detectedNot detected
Neuronal cells Not detectedNot detectedLow






HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 62.6
Sample id Sample description nTPM
Hippocampus
nTPM: 59.6
2529 Female, age 94, left hemisphere 75.9
1898 Male, age 80, left hemisphere 67.7
1855 Male, age 76, left hemisphere 65.0
2621 Female, age 67, right hemisphere 51.2
2148 Female, age 91, left hemisphere 50.4
1911 Female, age 85, right hemisphere 47.4
Dentate gyrus
nTPM: 51.8
2010 Male, age 76, both hemispheres 72.1
2530 Female, age 94, left hemisphere 61.1
2528 Male, age 74, both hemispheres 57.0
2246 Female, age 85, both hemispheres 44.6
1927 Female, age 91, both hemispheres 41.5
2531 Female, age 67, both hemispheres 34.6
Entorhinal gyrus
nTPM: 50.8
2117 Female, age 91, right hemisphere 66.7
1938 Female, age 85, left hemisphere 57.7
1787 Male, age 76, left hemisphere 51.9
2764 Male, age 80, right hemisphere 49.6
2686 Male, age 75, right hemisphere 42.1
2613 Female, age 94, left hemisphere 36.9
Hippocampus, CA1
nTPM: 55.6
2045 Male, age 76, both hemispheres 59.0
2527 Male, age 74, both hemispheres 58.9
2749 Male, age 80, left hemisphere 56.1
1873 Female, age 85, both hemispheres 55.6
2082 Female, age 91, right hemisphere 48.5
Hippocampus, CA2
nTPM: 56.8
2249 Male, age 74, both hemispheres 66.5
2437 Female, age 94, left hemisphere 60.2
1892 Male, age 76, both hemispheres 56.4
1963 Male, age 80, left hemisphere 55.2
1940 Female, age 85, left hemisphere 53.0
2113 Female, age 91, right hemisphere 49.3
Hippocampus, CA3
nTPM: 56.5
2436 Male, age 74, both hemispheres 86.2
1867 Male, age 76, both hemispheres 60.2
1891 Female, age 85, both hemispheres 55.0
2137 Male, age 80, left hemisphere 53.0
2620 Female, age 94, left hemisphere 43.4
2861 Female, age 67, both hemispheres 41.1
Parahippocampal cortex
nTPM: 52.9
2018 Male, age 76, both hemispheres 71.0
2245 Female, age 91, both hemispheres 65.7
1850 Male, age 80, both hemispheres 60.8
1990 Female, age 91, right hemisphere 55.4
1933 Female, age 85, both hemispheres 54.2
2250 Female, age 67, right hemisphere 51.4
2532 Female, age 72, left hemisphere 46.1
2692 Male, age 74, both hemispheres 42.1
2693 Female, age 94, both hemispheres 42.1
2622 Female, age 67, right hemisphere 40.5
Perirhinal gyrus
nTPM: 52.2
1841 Female, age 85, right hemisphere 57.5
1847 Female, age 91, left hemisphere 57.1
1794 Male, age 80, right hemisphere 56.6
2521 Female, age 94, right hemisphere 46.1
2848 Male, age 76, right hemisphere 43.9
Subiculum
nTPM: 62.6
2042 Male, age 76, both hemispheres 77.5
2438 Female, age 94, left hemisphere 73.8
1977 Female, age 85, both hemispheres 56.8
1901 Male, age 80, both hemispheres 56.2
2619 Male, age 74, both hemispheres 56.2
2729 Female, age 91, right hemisphere 55.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 201.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 201.1
Samples: 255

Max nTPM: 439.7
Min nTPM: 112.2
Std nTPM: 45.5
Median nTPM: 197.7
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 439.7
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 408.9
GTEX-1PWST-0011-R1b-SM-F2I38 70-79 years, male 326.2
GTEX-1F52S-0011-R1a-SM-9OSX9 60-69 years, female 320.6
GTEX-ZAJG-0011-R1a-SM-GQ1CV 50-59 years, female 313.5
GTEX-1LVAO-0011-R1a-SM-F649O 60-69 years, male 311.0
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 310.5
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 306.8
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 298.1
GTEX-1P4AB-0011-R1b-SM-F2TAV 50-59 years, male 296.8
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 293.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 242.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 242.4
FF:10169-103B7 60 years, female 261.7
FF:10153-102I9 76 years, female 223.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 94.4
Pig sample Sample description nTPM
Subiculum
nTPM: 92.8
Samples: 4

Max nTPM: 127.5
Min nTPM: 74.5
Sample A Female 127.5
Sample B Female 86.6
Sample C Male 74.5
Sample D Male 82.7
Dorsal hippocampus
nTPM: 93.5
Samples: 4

Max nTPM: 124.5
Min nTPM: 78.6
Sample A Female 124.5
Sample B Female 91.4
Sample C Male 79.4
Sample D Male 78.6
Entorhinal cortex
nTPM: 85.0
Samples: 4

Max nTPM: 94.8
Min nTPM: 67.0
Sample A Female 92.8
Sample B Female 94.8
Sample C Male 85.4
Sample D Male 67.0
Ventral hippocampus
nTPM: 94.4
Samples: 4

Max nTPM: 111.9
Min nTPM: 65.4
Sample A Female 99.7
Sample B Female 65.4
Sample C Male 111.9
Sample D Male 100.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 80.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 74.3
Samples: 4

Max nTPM: 75.8
Min nTPM: 73.1
Sample A Male 75.1
Sample B Male 73.1
Sample C Female 75.8
Sample D Female 73.3
Hippocampal formation
nTPM: 80.6
Samples: 4

Max nTPM: 88.0
Min nTPM: 70.6
Sample A Male 88.0
Sample B Male 70.6
Sample C Female 80.1
Sample D Female 83.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 0.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.7
1344 Antisense, RP_Baylor_102713, Mouse strain C57BL/6J (56 days, male) 0.7
1343 Antisense, RP_Baylor_102713, Mouse strain C57BL/6J (56 days, male) 0.1

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