MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:245.7 nTPM
HPA Brain:74.3 nTPM
GTEx:245.7 nTPM
FANTOM5:212.3 Scaled Tags Per Million
Pig:119.5 nTPM
Mouse:102.2 nTPM
Allen mouse:0.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 74.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 53.0
1870 Female, age 42, unknown 68.6
2411 Female, age 72, unknown 57.9
2828 Female, age 72, unknown 57.8
1827 Male, age 72, unknown 57.6
2019 Male, age 18, unknown 54.7
2586 Male, age 75, left hemisphere 48.4
2666 Male, age 74, left hemisphere 48.4
1830 Male, age 51, unknown 48.2
1833 Male, age 53, unknown 46.1
2219 Male, age 76, both hemispheres 42.5
Dorsal raphe nucleus
nTPM: 67.5
2047 Male, age 72, unknown 79.0
2298 Female, age 72, unknown 71.2
1828 Male, age 53, unknown 65.9
2750 Male, age 76, both hemispheres 61.0
2016 Female, age 72, unknown 60.1
Inferior colliculus
nTPM: 58.0
1890 Male, age 53, unknown 63.2
2097 Female, age 72, unknown 62.0
2849 Male, age 72, unknown 53.5
1848 Female, age 42, unknown 53.2
Median raphe nucleus
nTPM: 74.3
2220 Male, age 76, midline 74.3
Periaquaductal grey, anterior
nTPM: 58.3
1947 Male, age 18, unknown 60.7
2502 Female, age 75, unknown 57.9
1795 Male, age 51, unknown 56.1
Periaquaductal grey, dorsal
nTPM: 59.0
2850 Male, age 76, both hemispheres 71.2
1840 Male, age 53, unknown 60.0
1831 Male, age 72, unknown 53.5
2464 Female, age 72, unknown 51.3
Periaquaductal grey, lateral
nTPM: 61.3
2140 Male, age 76, both hemispheres 65.7
2053 Male, age 18, unknown 62.5
2272 Male, age 74, both hemispheres 55.8
Pretectal area
nTPM: 58.3
2667 Female, age 75, unknown 67.7
2273 Male, age 74, both hemispheres 67.0
1817 Female, age 42, unknown 64.6
2224 Female, age 72, unknown 61.2
1815 Male, age 53, unknown 57.3
1944 Female, age 72, unknown 57.3
2007 Male, age 72, unknown 55.9
1816 Male, age 51, unknown 55.1
2407 Male, age 75, both hemispheres 53.9
2825 Male, age 18, unknown 52.4
2316 Male, age 76, right hemisphere 49.4
Red nucleus
nTPM: 60.2
1865 Male, age 51, unknown 72.3
1821 Female, age 72, unknown 66.8
1954 Female, age 42, unknown 63.9
2769 Male, age 72, unknown 63.9
2725 Female, age 75, unknown 62.3
1904 Male, age 53, unknown 62.0
2823 Male, age 76, right hemisphere 61.3
2503 Female, age 72, unknown 60.5
2227 Male, age 72, unknown 58.7
2785 Male, age 18, unknown 52.1
2584 Male, age 75, left hemisphere 50.4
2588 Male, age 74, left hemisphere 48.4
Substantia nigra
nTPM: 66.6
1916 Female, age 42, unknown 94.8
2699 Male, age 18, unknown 80.2
1851 Male, age 51, unknown 74.8
2409 Female, age 72, unknown 64.9
2665 Male, age 74, both hemispheres 62.9
1889 Female, age 72, unknown 62.2
1941 Male, age 53, unknown 61.7
2590 Female, age 75, unknown 59.7
2241 Male, age 72, unknown 55.8
2583 Male, age 75, right hemisphere 49.1
Superior colliculus
nTPM: 55.4
2587 Male, age 74, left hemisphere 69.8
1796 Male, age 53, unknown 59.6
1995 Male, age 72, unknown 58.9
1913 Female, age 42, unknown 56.9
2664 Male, age 75, both hemispheres 53.3
1839 Male, age 51, unknown 53.0
2087 Female, age 72, unknown 52.5
2261 Male, age 18, unknown 51.6
2668 Female, age 75, unknown 50.2
1895 Male, age 76, right hemisphere 48.6
Ventral tegmental area
nTPM: 64.2
1915 Female, age 42, unknown 74.4
2410 Female, age 72, unknown 70.0
2021 Male, age 53, unknown 63.5
2223 Female, age 72, unknown 61.9
2218 Male, age 76, both hemispheres 58.1
1942 Male, age 51, unknown 57.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 245.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 245.7
Samples: 183

Max nTPM: 491.7
Min nTPM: 120.2
Std nTPM: 58.4
Median nTPM: 237.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 491.7
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 407.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 407.0
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 393.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 386.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 377.9
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 370.8
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 367.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 367.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 358.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 356.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 212.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 212.3
FF:10158-103A5 76 years, female 212.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 119.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 107.1
Samples: 4

Max nTPM: 158.1
Min nTPM: 66.8
Sample A Female 158.1
Sample B Female 96.8
Sample C Male 106.8
Sample D Male 66.8
Midbrain
nTPM: 116.2
Samples: 4

Max nTPM: 146.8
Min nTPM: 87.1
Sample A Female 146.8
Sample B Female 87.1
Sample C Male 134.6
Sample D Male 96.2
Periaqueductal gray
nTPM: 88.8
Samples: 3

Max nTPM: 107.8
Min nTPM: 75.8
Sample B Female 82.8
Sample C Male 107.8
Sample D Male 75.8
Superior colliculi
nTPM: 119.6
Samples: 4

Max nTPM: 143.8
Min nTPM: 96.8
Sample A Female 143.8
Sample B Female 120.8
Sample C Male 116.8
Sample D Male 96.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 102.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 102.2
Samples: 4

Max nTPM: 111.9
Min nTPM: 93.6
Sample A Male 111.9
Sample B Male 100.4
Sample C Female 93.6
Sample D Female 102.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
1344 Antisense, RP_Baylor_102713, Mouse strain C57BL/6J (56 days, male) 0.8
1343 Antisense, RP_Baylor_102713, Mouse strain C57BL/6J (56 days, male) 0.2

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