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ST6GALNAC6
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  • ST6GALNAC6
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:181.0 nTPM
HPA Brain:112.6 nTPM
GTEx:181.0 nTPM
FANTOM5:162.2 Scaled Tags Per Million
Pig:44.2 nTPM
Mouse:110.3 nTPM
Allen mouse:1.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

112.6
Sample id Sample description nTPM
Amygdala
nTPM: 89.5
2517 Female, age 94, left hemisphere 116.6
2514 Male, age 75, right hemisphere 92.9
1987 Female, age 91, left hemisphere 89.8
2695 Female, age 67, right hemisphere 82.2
2814 Male, age 76, right hemisphere 66.0
Basal amygdala
nTPM: 112.6
2243 Female, age 91, right hemisphere 132.0
2609 Male, age 75, right hemisphere 128.2
2827 Female, age 67, right hemisphere 127.0
2685 Female, age 94, left hemisphere 115.7
2110 Male, age 80, left hemisphere 97.7
1955 Male, age 76, both hemispheres 74.7
Central amygdala
nTPM: 100.5
2826 Female, age 94, left hemisphere 146.1
2515 Male, age 75, right hemisphere 114.1
2239 Male, age 80, left hemisphere 97.6
2701 Female, age 91, right hemisphere 81.5
1905 Male, age 76, both hemispheres 63.3
Corticomedial amygdala
nTPM: 103.9
2829 Male, age 80, left hemisphere 126.9
2428 Male, age 75, right hemisphere 123.7
2242 Female, age 91, right hemisphere 114.1
2535 Female, age 67, right hemisphere 104.7
2429 Female, age 94, left hemisphere 84.9
2240 Male, age 76, both hemispheres 69.0
Lateral amygdala
nTPM: 105.9
2830 Female, age 67, right hemisphere 126.5
2534 Female, age 94, left hemisphere 123.1
2516 Male, age 75, right hemisphere 105.8
2256 Male, age 80, left hemisphere 102.3
2255 Female, age 91, right hemisphere 101.3
1883 Male, age 76, both hemispheres 76.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

181.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 181.0
Samples: 181

Max nTPM: 404.7
Min nTPM: 85.0
Std nTPM: 55.3
Median nTPM: 172.0
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 404.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 394.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 360.0
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 306.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 295.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 291.7
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 289.9
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 286.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 280.2
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 278.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 272.0
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 266.3
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 260.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 256.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 253.4
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 252.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 249.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 248.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 244.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 243.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 242.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 241.8
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 240.8
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 240.6
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 239.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 239.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 235.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 235.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 233.8
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 233.8
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 233.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 231.4
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 228.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 227.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 227.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 225.8
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 225.1
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 224.4
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 223.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 223.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 223.1
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 220.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 216.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 215.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 215.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 214.4
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 213.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 212.1
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 211.1
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 210.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 209.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 209.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 206.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 205.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 204.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 204.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 200.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 200.8
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 200.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 199.1
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 197.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 197.2
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 197.2
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 196.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 196.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 195.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 194.4
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 193.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 193.3
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 192.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 192.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 190.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 189.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 189.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 188.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 188.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 187.9
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 186.4
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 184.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 184.1
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 182.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 181.7
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 180.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 179.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 179.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 179.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 179.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 177.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 175.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 173.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 172.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 171.1
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 170.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 170.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 168.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 168.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 168.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 167.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 167.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 166.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 165.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 165.9
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 165.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 163.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 163.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 163.0
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 162.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 162.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 159.6
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 158.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 158.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 156.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 155.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 155.6
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 155.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 153.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 152.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 152.4
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 152.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 151.8
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 150.9
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 150.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 149.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 149.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 149.0
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 148.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 147.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 146.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 145.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 144.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 144.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 143.7
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 143.1
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 142.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 141.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 141.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 140.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 140.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 139.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 138.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 137.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 137.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 135.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 135.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 134.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 132.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 132.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 132.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 131.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 129.4
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 128.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 127.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 127.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 127.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 126.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 123.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 120.4
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 118.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 118.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 117.6
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 116.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 116.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 115.9
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 115.5
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 112.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 112.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 110.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 109.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 109.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 108.2
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 107.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 107.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 107.1
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 102.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 101.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 100.5
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 99.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 98.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 95.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 87.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 85.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

162.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 162.2
FF:10151-102I7 76 years, female 162.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

44.2
Pig sample Sample description nTPM
Amygdala
nTPM: 44.2
Samples: 4

Max nTPM: 55.7
Min nTPM: 34.8
Sample A Female 55.7
Sample B Female 34.8
Sample C Male 44.7
Sample D Male 41.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

110.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 110.3
Samples: 4

Max nTPM: 127.3
Min nTPM: 96.0
Sample A Male 96.0
Sample B Male 109.5
Sample C Female 127.3
Sample D Female 108.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

1.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 1.1
385995 Antisense, RP_040625_01_G03, Mouse strain C57BL/6J (56 days, male) 2.2
74047902 Antisense, RP_051214_02_B12, Mouse strain C57BL/6J (56 days, male) 0.7
74822602 Antisense, RP_060321_02_H01, Mouse strain C57BL/6J (56 days, male) 0.4

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