MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:66.4 nTPM
HPA Brain:76.6 nTPM
GTEx:66.4 nTPM
FANTOM5:31.1 Scaled Tags Per Million
Pig:25.5 nTPM
Mouse:62.1 nTPM
Allen mouse:0.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 76.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 66.3
2586 Male, age 75, left hemisphere 133.8
2219 Male, age 76, both hemispheres 81.9
2828 Female, age 72, unknown 76.8
1827 Male, age 72, unknown 72.0
2666 Male, age 74, left hemisphere 65.5
2411 Female, age 72, unknown 49.8
1870 Female, age 42, unknown 48.6
1833 Male, age 53, unknown 47.1
1830 Male, age 51, unknown 44.2
2019 Male, age 18, unknown 43.3
Dorsal raphe nucleus
nTPM: 50.1
2298 Female, age 72, unknown 56.8
2047 Male, age 72, unknown 55.4
2016 Female, age 72, unknown 51.9
2750 Male, age 76, both hemispheres 43.9
1828 Male, age 53, unknown 42.3
Inferior colliculus
nTPM: 63.7
1848 Female, age 42, unknown 68.3
2849 Male, age 72, unknown 64.7
1890 Male, age 53, unknown 63.3
2097 Female, age 72, unknown 58.3
Median raphe nucleus
nTPM: 46.4
2220 Male, age 76, midline 46.4
Periaquaductal grey, anterior
nTPM: 76.6
1795 Male, age 51, unknown 79.4
1947 Male, age 18, unknown 78.3
2502 Female, age 75, unknown 72.2
Periaquaductal grey, dorsal
nTPM: 57.8
1840 Male, age 53, unknown 75.7
2464 Female, age 72, unknown 56.1
1831 Male, age 72, unknown 55.6
2850 Male, age 76, both hemispheres 43.6
Periaquaductal grey, lateral
nTPM: 42.2
2053 Male, age 18, unknown 54.4
2140 Male, age 76, both hemispheres 37.7
2272 Male, age 74, both hemispheres 34.7
Pretectal area
nTPM: 62.2
1816 Male, age 51, unknown 84.5
2007 Male, age 72, unknown 75.2
1817 Female, age 42, unknown 73.4
1815 Male, age 53, unknown 72.0
1944 Female, age 72, unknown 69.3
2407 Male, age 75, both hemispheres 66.4
2825 Male, age 18, unknown 58.6
2667 Female, age 75, unknown 57.5
2224 Female, age 72, unknown 47.7
2316 Male, age 76, right hemisphere 42.5
2273 Male, age 74, both hemispheres 37.1
Red nucleus
nTPM: 47.4
2584 Male, age 75, left hemisphere 80.1
2588 Male, age 74, left hemisphere 57.6
2785 Male, age 18, unknown 46.9
2503 Female, age 72, unknown 46.7
2769 Male, age 72, unknown 44.9
2227 Male, age 72, unknown 44.8
1904 Male, age 53, unknown 44.0
1954 Female, age 42, unknown 43.1
2725 Female, age 75, unknown 42.5
1865 Male, age 51, unknown 41.9
1821 Female, age 72, unknown 41.8
2823 Male, age 76, right hemisphere 34.9
Substantia nigra
nTPM: 72.0
2665 Male, age 74, both hemispheres 105.8
1851 Male, age 51, unknown 81.0
2583 Male, age 75, right hemisphere 79.1
1916 Female, age 42, unknown 77.2
2590 Female, age 75, unknown 73.3
2699 Male, age 18, unknown 64.6
1941 Male, age 53, unknown 64.2
2241 Male, age 72, unknown 63.6
1889 Female, age 72, unknown 62.1
2409 Female, age 72, unknown 49.5
Superior colliculus
nTPM: 68.9
2664 Male, age 75, both hemispheres 115.8
2261 Male, age 18, unknown 79.5
1796 Male, age 53, unknown 79.1
2668 Female, age 75, unknown 78.0
2087 Female, age 72, unknown 73.0
1895 Male, age 76, right hemisphere 57.6
1839 Male, age 51, unknown 57.1
2587 Male, age 74, left hemisphere 50.8
1995 Male, age 72, unknown 49.5
1913 Female, age 42, unknown 48.6
Ventral tegmental area
nTPM: 61.3
1915 Female, age 42, unknown 71.5
1942 Male, age 51, unknown 66.5
2218 Male, age 76, both hemispheres 58.4
2021 Male, age 53, unknown 58.2
2223 Female, age 72, unknown 57.6
2410 Female, age 72, unknown 55.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 66.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 66.4
Samples: 183

Max nTPM: 206.2
Min nTPM: 13.1
Std nTPM: 26.6
Median nTPM: 63.6
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 206.2
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 174.2
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 165.3
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 162.8
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 143.9
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 138.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 131.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 120.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 118.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 104.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 102.4
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 31.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 31.1
FF:10158-103A5 76 years, female 31.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 25.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 19.9
Samples: 4

Max nTPM: 23.5
Min nTPM: 13.2
Sample A Female 23.4
Sample B Female 19.4
Sample C Male 23.5
Sample D Male 13.2
Midbrain
nTPM: 24.7
Samples: 4

Max nTPM: 35.1
Min nTPM: 12.0
Sample A Female 12.0
Sample B Female 18.5
Sample C Male 35.1
Sample D Male 33.1
Periaqueductal gray
nTPM: 18.1
Samples: 3

Max nTPM: 22.0
Min nTPM: 15.6
Sample B Female 16.8
Sample C Male 22.0
Sample D Male 15.6
Superior colliculi
nTPM: 25.5
Samples: 4

Max nTPM: 28.6
Min nTPM: 19.4
Sample A Female 26.8
Sample B Female 19.4
Sample C Male 27.0
Sample D Male 28.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 62.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 62.1
Samples: 4

Max nTPM: 63.0
Min nTPM: 60.3
Sample A Male 62.5
Sample B Male 63.0
Sample C Female 60.3
Sample D Female 62.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
74047902 Antisense, RP_051214_02_B12, Mouse strain C57BL/6J (56 days, male) 0.4
385995 Antisense, RP_040625_01_G03, Mouse strain C57BL/6J (56 days, male) 0.2
74822602 Antisense, RP_060321_02_H01, Mouse strain C57BL/6J (56 days, male) 0.2

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo