MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.0 nTPM
HPA Brain:24.9 nTPM
GTEx:16.0 nTPM
FANTOM5:28.0 Scaled Tags Per Million
Pig:29.6 nTPM
Mouse:42.5 nTPM
Allen mouse:1.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 24.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 20.2
2411 Female, age 72, unknown 22.9
2019 Male, age 18, unknown 22.0
1827 Male, age 72, unknown 21.2
2666 Male, age 74, left hemisphere 20.9
2586 Male, age 75, left hemisphere 20.8
1870 Female, age 42, unknown 20.3
2828 Female, age 72, unknown 20.1
2219 Male, age 76, both hemispheres 18.4
1830 Male, age 51, unknown 18.0
1833 Male, age 53, unknown 17.0
Dorsal raphe nucleus
nTPM: 22.1
2298 Female, age 72, unknown 25.8
2047 Male, age 72, unknown 22.5
1828 Male, age 53, unknown 22.4
2750 Male, age 76, both hemispheres 20.4
2016 Female, age 72, unknown 19.2
Inferior colliculus
nTPM: 20.1
2097 Female, age 72, unknown 21.6
1890 Male, age 53, unknown 20.3
1848 Female, age 42, unknown 19.8
2849 Male, age 72, unknown 18.7
Median raphe nucleus
nTPM: 22.7
2220 Male, age 76, midline 22.7
Periaquaductal grey, anterior
nTPM: 22.3
1947 Male, age 18, unknown 25.3
2502 Female, age 75, unknown 21.4
1795 Male, age 51, unknown 20.3
Periaquaductal grey, dorsal
nTPM: 17.7
2850 Male, age 76, both hemispheres 18.7
1831 Male, age 72, unknown 18.3
2464 Female, age 72, unknown 17.2
1840 Male, age 53, unknown 16.6
Periaquaductal grey, lateral
nTPM: 19.2
2272 Male, age 74, both hemispheres 21.7
2140 Male, age 76, both hemispheres 18.1
2053 Male, age 18, unknown 17.9
Pretectal area
nTPM: 21.3
2667 Female, age 75, unknown 25.2
1817 Female, age 42, unknown 24.8
1816 Male, age 51, unknown 23.9
1944 Female, age 72, unknown 23.7
2007 Male, age 72, unknown 23.5
1815 Male, age 53, unknown 23.2
2224 Female, age 72, unknown 20.8
2273 Male, age 74, both hemispheres 19.8
2407 Male, age 75, both hemispheres 19.7
2825 Male, age 18, unknown 16.4
2316 Male, age 76, right hemisphere 13.1
Red nucleus
nTPM: 20.3
1821 Female, age 72, unknown 25.4
2503 Female, age 72, unknown 22.2
1865 Male, age 51, unknown 21.7
2823 Male, age 76, right hemisphere 21.7
1904 Male, age 53, unknown 21.6
2725 Female, age 75, unknown 20.8
2769 Male, age 72, unknown 20.6
2785 Male, age 18, unknown 20.6
1954 Female, age 42, unknown 20.2
2227 Male, age 72, unknown 19.1
2584 Male, age 75, left hemisphere 16.0
2588 Male, age 74, left hemisphere 13.4
Substantia nigra
nTPM: 24.9
1916 Female, age 42, unknown 33.0
2409 Female, age 72, unknown 27.1
1851 Male, age 51, unknown 26.4
1941 Male, age 53, unknown 25.9
1889 Female, age 72, unknown 24.9
2241 Male, age 72, unknown 24.4
2699 Male, age 18, unknown 23.6
2665 Male, age 74, both hemispheres 22.0
2583 Male, age 75, right hemisphere 21.1
2590 Female, age 75, unknown 20.6
Superior colliculus
nTPM: 19.8
1796 Male, age 53, unknown 23.5
2261 Male, age 18, unknown 22.0
1895 Male, age 76, right hemisphere 21.3
2587 Male, age 74, left hemisphere 20.7
1913 Female, age 42, unknown 19.6
2668 Female, age 75, unknown 19.6
2087 Female, age 72, unknown 19.1
1839 Male, age 51, unknown 18.5
1995 Male, age 72, unknown 17.4
2664 Male, age 75, both hemispheres 16.6
Ventral tegmental area
nTPM: 23.1
2410 Female, age 72, unknown 29.5
2218 Male, age 76, both hemispheres 24.2
1915 Female, age 42, unknown 23.2
1942 Male, age 51, unknown 22.6
2223 Female, age 72, unknown 20.5
2021 Male, age 53, unknown 18.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 16.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.0
Samples: 183

Max nTPM: 31.9
Min nTPM: 8.7
Std nTPM: 3.7
Median nTPM: 15.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 31.9
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 29.7
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 27.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 27.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 26.4
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 24.9
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 24.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 23.7
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 22.5
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 22.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 22.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 28.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 28.0
FF:10158-103A5 76 years, female 28.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 29.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 27.5
Samples: 4

Max nTPM: 35.7
Min nTPM: 23.3
Sample A Female 35.7
Sample B Female 23.3
Sample C Male 27.2
Sample D Male 23.9
Midbrain
nTPM: 29.3
Samples: 4

Max nTPM: 38.2
Min nTPM: 23.4
Sample A Female 38.2
Sample B Female 23.4
Sample C Male 30.3
Sample D Male 25.4
Periaqueductal gray
nTPM: 21.8
Samples: 3

Max nTPM: 22.8
Min nTPM: 20.3
Sample B Female 22.2
Sample C Male 22.8
Sample D Male 20.3
Superior colliculi
nTPM: 29.7
Samples: 4

Max nTPM: 34.3
Min nTPM: 25.0
Sample A Female 34.3
Sample B Female 25.0
Sample C Male 31.3
Sample D Male 28.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 42.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 42.6
Samples: 4

Max nTPM: 44.3
Min nTPM: 40.7
Sample A Male 43.6
Sample B Male 44.3
Sample C Female 40.7
Sample D Female 41.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.2
68148721 Antisense, RP_041116_02_A01, Mouse strain C57BL/6J (56 days, male) 1.2

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