MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:58.5 nTPM
HPA Brain:73.1 nTPM
GTEx:58.5 nTPM
FANTOM5:44.7 Scaled Tags Per Million
Pig:109.5 nTPM
Mouse:153.6 nTPM
Allen mouse:9.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 73.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 46.3
2411 Female, age 72, unknown 58.8
1827 Male, age 72, unknown 58.5
1870 Female, age 42, unknown 52.0
2828 Female, age 72, unknown 49.0
2219 Male, age 76, both hemispheres 46.8
2666 Male, age 74, left hemisphere 45.9
1833 Male, age 53, unknown 43.4
2586 Male, age 75, left hemisphere 41.6
1830 Male, age 51, unknown 39.9
2019 Male, age 18, unknown 27.1
Dorsal raphe nucleus
nTPM: 60.2
2298 Female, age 72, unknown 81.5
2047 Male, age 72, unknown 68.5
2750 Male, age 76, both hemispheres 67.8
1828 Male, age 53, unknown 48.0
2016 Female, age 72, unknown 35.4
Inferior colliculus
nTPM: 40.8
2097 Female, age 72, unknown 44.6
1848 Female, age 42, unknown 42.6
2849 Male, age 72, unknown 40.6
1890 Male, age 53, unknown 35.2
Median raphe nucleus
nTPM: 73.1
2220 Male, age 76, midline 73.1
Periaquaductal grey, anterior
nTPM: 57.4
1947 Male, age 18, unknown 64.0
1795 Male, age 51, unknown 57.4
2502 Female, age 75, unknown 50.7
Periaquaductal grey, dorsal
nTPM: 41.1
2850 Male, age 76, both hemispheres 46.1
2464 Female, age 72, unknown 44.6
1840 Male, age 53, unknown 41.4
1831 Male, age 72, unknown 32.5
Periaquaductal grey, lateral
nTPM: 44.8
2272 Male, age 74, both hemispheres 48.9
2053 Male, age 18, unknown 46.4
2140 Male, age 76, both hemispheres 39.2
Pretectal area
nTPM: 45.4
2825 Male, age 18, unknown 58.0
2224 Female, age 72, unknown 53.8
2667 Female, age 75, unknown 53.5
1816 Male, age 51, unknown 49.5
2007 Male, age 72, unknown 48.4
1815 Male, age 53, unknown 46.3
2273 Male, age 74, both hemispheres 45.9
1817 Female, age 42, unknown 41.4
1944 Female, age 72, unknown 37.3
2316 Male, age 76, right hemisphere 36.9
2407 Male, age 75, both hemispheres 28.1
Red nucleus
nTPM: 38.5
1821 Female, age 72, unknown 48.7
2725 Female, age 75, unknown 48.1
1865 Male, age 51, unknown 45.1
2503 Female, age 72, unknown 41.6
1954 Female, age 42, unknown 39.2
2227 Male, age 72, unknown 39.2
2769 Male, age 72, unknown 38.3
1904 Male, age 53, unknown 35.8
2588 Male, age 74, left hemisphere 35.3
2823 Male, age 76, right hemisphere 31.1
2785 Male, age 18, unknown 31.0
2584 Male, age 75, left hemisphere 28.4
Substantia nigra
nTPM: 48.1
1916 Female, age 42, unknown 80.5
1941 Male, age 53, unknown 64.2
2241 Male, age 72, unknown 50.4
1851 Male, age 51, unknown 50.2
1889 Female, age 72, unknown 44.2
2699 Male, age 18, unknown 42.7
2409 Female, age 72, unknown 41.2
2665 Male, age 74, both hemispheres 40.1
2590 Female, age 75, unknown 35.2
2583 Male, age 75, right hemisphere 32.7
Superior colliculus
nTPM: 40.6
2261 Male, age 18, unknown 57.9
1796 Male, age 53, unknown 50.3
2087 Female, age 72, unknown 42.8
1839 Male, age 51, unknown 42.2
1895 Male, age 76, right hemisphere 40.9
2587 Male, age 74, left hemisphere 40.8
2668 Female, age 75, unknown 38.8
1913 Female, age 42, unknown 36.5
2664 Male, age 75, both hemispheres 29.3
1995 Male, age 72, unknown 26.5
Ventral tegmental area
nTPM: 51.3
1915 Female, age 42, unknown 59.9
2223 Female, age 72, unknown 58.5
2410 Female, age 72, unknown 56.9
2218 Male, age 76, both hemispheres 52.4
2021 Male, age 53, unknown 42.2
1942 Male, age 51, unknown 37.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 58.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 58.5
Samples: 183

Max nTPM: 185.8
Min nTPM: 30.3
Std nTPM: 21.8
Median nTPM: 52.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 185.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 144.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 130.2
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 120.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 109.8
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 108.0
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 107.8
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 101.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 100.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 99.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 99.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 44.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 44.7
FF:10158-103A5 76 years, female 44.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 109.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 95.3
Samples: 4

Max nTPM: 131.1
Min nTPM: 71.5
Sample A Female 131.1
Sample B Female 71.5
Sample C Male 100.8
Sample D Male 77.6
Midbrain
nTPM: 109.5
Samples: 4

Max nTPM: 231.5
Min nTPM: 57.0
Sample A Female 231.5
Sample B Female 90.0
Sample C Male 59.4
Sample D Male 57.0
Periaqueductal gray
nTPM: 81.2
Samples: 3

Max nTPM: 92.1
Min nTPM: 68.7
Sample B Female 82.7
Sample C Male 92.1
Sample D Male 68.7
Superior colliculi
nTPM: 77.2
Samples: 4

Max nTPM: 88.7
Min nTPM: 66.4
Sample A Female 82.3
Sample B Female 88.7
Sample C Male 66.4
Sample D Male 71.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 153.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 153.6
Samples: 4

Max nTPM: 166.2
Min nTPM: 146.0
Sample A Male 147.4
Sample B Male 154.7
Sample C Female 146.0
Sample D Female 166.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 9.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.3
76085745 Antisense, RP_060530_01_F05, Mouse strain C57BL/6J (56 days, male) 11.1
69113674 Antisense, RP_050316_02_E08, Mouse strain C57BL/6J (56 days, male) 7.4

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