MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:24.6 nTPM
HPA Brain:59.2 nTPM
GTEx:24.6 nTPM
FANTOM5:29.6 Scaled Tags Per Million
Pig:22.9 nTPM
Mouse:12.8 nTPM
Allen mouse:1.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 59.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 55.4
2586 Male, age 75, left hemisphere 82.8
1827 Male, age 72, unknown 58.9
2828 Female, age 72, unknown 57.5
2666 Male, age 74, left hemisphere 55.7
1870 Female, age 42, unknown 52.6
2411 Female, age 72, unknown 50.3
2219 Male, age 76, both hemispheres 50.2
2019 Male, age 18, unknown 49.7
1833 Male, age 53, unknown 48.7
1830 Male, age 51, unknown 47.2
Dorsal raphe nucleus
nTPM: 48.0
2047 Male, age 72, unknown 51.0
2298 Female, age 72, unknown 49.3
2016 Female, age 72, unknown 47.8
2750 Male, age 76, both hemispheres 46.3
1828 Male, age 53, unknown 45.9
Inferior colliculus
nTPM: 49.8
1848 Female, age 42, unknown 54.5
2849 Male, age 72, unknown 53.7
1890 Male, age 53, unknown 46.2
2097 Female, age 72, unknown 45.0
Median raphe nucleus
nTPM: 43.8
2220 Male, age 76, midline 43.8
Periaquaductal grey, anterior
nTPM: 59.2
2502 Female, age 75, unknown 61.5
1947 Male, age 18, unknown 58.3
1795 Male, age 51, unknown 57.8
Periaquaductal grey, dorsal
nTPM: 46.5
1840 Male, age 53, unknown 59.6
2464 Female, age 72, unknown 50.0
1831 Male, age 72, unknown 39.9
2850 Male, age 76, both hemispheres 36.3
Periaquaductal grey, lateral
nTPM: 44.1
2053 Male, age 18, unknown 47.3
2140 Male, age 76, both hemispheres 43.7
2272 Male, age 74, both hemispheres 41.4
Pretectal area
nTPM: 54.3
1816 Male, age 51, unknown 61.2
2007 Male, age 72, unknown 60.9
2667 Female, age 75, unknown 59.3
2407 Male, age 75, both hemispheres 58.4
1944 Female, age 72, unknown 57.6
1817 Female, age 42, unknown 55.1
1815 Male, age 53, unknown 53.6
2825 Male, age 18, unknown 52.9
2224 Female, age 72, unknown 48.0
2316 Male, age 76, right hemisphere 47.4
2273 Male, age 74, both hemispheres 43.1
Red nucleus
nTPM: 48.2
2588 Male, age 74, left hemisphere 57.0
2584 Male, age 75, left hemisphere 54.7
2785 Male, age 18, unknown 53.3
2769 Male, age 72, unknown 50.1
2503 Female, age 72, unknown 49.7
2227 Male, age 72, unknown 48.1
1904 Male, age 53, unknown 47.5
1821 Female, age 72, unknown 46.3
1954 Female, age 42, unknown 46.3
1865 Male, age 51, unknown 43.7
2823 Male, age 76, right hemisphere 42.5
2725 Female, age 75, unknown 39.7
Substantia nigra
nTPM: 53.3
2665 Male, age 74, both hemispheres 60.4
1916 Female, age 42, unknown 59.8
2583 Male, age 75, right hemisphere 59.4
1851 Male, age 51, unknown 59.3
1889 Female, age 72, unknown 52.4
2241 Male, age 72, unknown 50.6
2699 Male, age 18, unknown 50.0
1941 Male, age 53, unknown 47.5
2409 Female, age 72, unknown 47.1
2590 Female, age 75, unknown 46.6
Superior colliculus
nTPM: 54.6
2664 Male, age 75, both hemispheres 75.4
2668 Female, age 75, unknown 64.8
1796 Male, age 53, unknown 59.0
2087 Female, age 72, unknown 56.0
2261 Male, age 18, unknown 54.5
1895 Male, age 76, right hemisphere 51.1
1839 Male, age 51, unknown 50.8
2587 Male, age 74, left hemisphere 46.1
1995 Male, age 72, unknown 44.3
1913 Female, age 42, unknown 43.6
Ventral tegmental area
nTPM: 48.7
1942 Male, age 51, unknown 52.8
2410 Female, age 72, unknown 52.2
1915 Female, age 42, unknown 52.0
2021 Male, age 53, unknown 48.4
2218 Male, age 76, both hemispheres 46.0
2223 Female, age 72, unknown 40.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 24.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 24.6
Samples: 183

Max nTPM: 38.3
Min nTPM: 8.8
Std nTPM: 5.4
Median nTPM: 24.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 38.3
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 36.9
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 36.1
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 35.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 35.7
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 35.4
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 34.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 34.6
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 34.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 33.6
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 33.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 29.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 29.6
FF:10158-103A5 76 years, female 29.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 22.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 21.6
Samples: 4

Max nTPM: 22.6
Min nTPM: 20.3
Sample A Female 22.4
Sample B Female 20.9
Sample C Male 22.6
Sample D Male 20.3
Midbrain
nTPM: 22.6
Samples: 4

Max nTPM: 26.8
Min nTPM: 20.8
Sample A Female 20.8
Sample B Female 20.9
Sample C Male 26.8
Sample D Male 21.9
Periaqueductal gray
nTPM: 21.4
Samples: 3

Max nTPM: 22.6
Min nTPM: 20.3
Sample B Female 22.6
Sample C Male 21.4
Sample D Male 20.3
Superior colliculi
nTPM: 22.9
Samples: 4

Max nTPM: 25.0
Min nTPM: 20.9
Sample A Female 25.0
Sample B Female 22.5
Sample C Male 20.9
Sample D Male 23.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 12.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 12.8
Samples: 4

Max nTPM: 14.7
Min nTPM: 11.2
Sample A Male 11.2
Sample B Male 14.7
Sample C Female 12.7
Sample D Female 12.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.9
69169923 Antisense, RP_050321_04_E01, Mouse strain C57BL/6J (56 days, male) 2.0
70300150 Antisense, RP_050602_04_G12, Mouse strain C57BL/6J (56 days, male) 1.9

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