MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.7 nTPM
HPA Brain:24.8 nTPM
GTEx:10.7 nTPM
FANTOM5:15.6 Scaled Tags Per Million
Pig:6.0 nTPM
Mouse:5.0 nTPM
Allen mouse:0.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 24.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.0
2019 Male, age 18, unknown 21.5
1827 Male, age 72, unknown 19.0
2586 Male, age 75, left hemisphere 18.0
2411 Female, age 72, unknown 16.7
2828 Female, age 72, unknown 16.4
1870 Female, age 42, unknown 15.3
2219 Male, age 76, both hemispheres 14.2
1833 Male, age 53, unknown 13.7
2666 Male, age 74, left hemisphere 12.9
1830 Male, age 51, unknown 11.9
Dorsal raphe nucleus
nTPM: 18.6
2298 Female, age 72, unknown 26.6
2016 Female, age 72, unknown 17.5
1828 Male, age 53, unknown 17.4
2047 Male, age 72, unknown 16.2
2750 Male, age 76, both hemispheres 15.1
Inferior colliculus
nTPM: 15.1
2097 Female, age 72, unknown 17.4
1848 Female, age 42, unknown 15.0
1890 Male, age 53, unknown 15.0
2849 Male, age 72, unknown 13.0
Median raphe nucleus
nTPM: 15.0
2220 Male, age 76, midline 15.0
Periaquaductal grey, anterior
nTPM: 18.9
1795 Male, age 51, unknown 23.7
2502 Female, age 75, unknown 18.5
1947 Male, age 18, unknown 14.4
Periaquaductal grey, dorsal
nTPM: 18.2
2850 Male, age 76, both hemispheres 26.3
1840 Male, age 53, unknown 17.2
1831 Male, age 72, unknown 15.3
2464 Female, age 72, unknown 14.0
Periaquaductal grey, lateral
nTPM: 24.8
2272 Male, age 74, both hemispheres 34.6
2140 Male, age 76, both hemispheres 24.6
2053 Male, age 18, unknown 15.3
Pretectal area
nTPM: 19.3
2273 Male, age 74, both hemispheres 31.7
1816 Male, age 51, unknown 22.3
2007 Male, age 72, unknown 21.7
2224 Female, age 72, unknown 20.8
2667 Female, age 75, unknown 19.1
1817 Female, age 42, unknown 18.7
1944 Female, age 72, unknown 18.1
1815 Male, age 53, unknown 17.4
2825 Male, age 18, unknown 16.4
2316 Male, age 76, right hemisphere 13.6
2407 Male, age 75, both hemispheres 11.9
Red nucleus
nTPM: 15.1
2785 Male, age 18, unknown 20.3
2769 Male, age 72, unknown 17.1
2725 Female, age 75, unknown 16.5
2227 Male, age 72, unknown 15.5
1954 Female, age 42, unknown 15.4
1904 Male, age 53, unknown 15.1
2503 Female, age 72, unknown 14.9
2588 Male, age 74, left hemisphere 14.5
1821 Female, age 72, unknown 14.1
1865 Male, age 51, unknown 13.3
2823 Male, age 76, right hemisphere 12.6
2584 Male, age 75, left hemisphere 12.1
Substantia nigra
nTPM: 15.4
1916 Female, age 42, unknown 19.0
1889 Female, age 72, unknown 17.4
1941 Male, age 53, unknown 16.5
1851 Male, age 51, unknown 16.4
2409 Female, age 72, unknown 16.4
2665 Male, age 74, both hemispheres 14.2
2583 Male, age 75, right hemisphere 13.7
2241 Male, age 72, unknown 13.5
2590 Female, age 75, unknown 13.4
2699 Male, age 18, unknown 13.4
Superior colliculus
nTPM: 16.0
2261 Male, age 18, unknown 21.7
1796 Male, age 53, unknown 19.3
2087 Female, age 72, unknown 18.8
1995 Male, age 72, unknown 16.1
2668 Female, age 75, unknown 16.0
1913 Female, age 42, unknown 14.6
1839 Male, age 51, unknown 14.0
2664 Male, age 75, both hemispheres 14.0
2587 Male, age 74, left hemisphere 13.7
1895 Male, age 76, right hemisphere 11.6
Ventral tegmental area
nTPM: 15.3
2410 Female, age 72, unknown 18.0
1915 Female, age 42, unknown 15.8
2218 Male, age 76, both hemispheres 15.7
1942 Male, age 51, unknown 15.4
2021 Male, age 53, unknown 15.0
2223 Female, age 72, unknown 11.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 10.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.7
Samples: 183

Max nTPM: 19.9
Min nTPM: 5.7
Std nTPM: 2.5
Median nTPM: 10.5
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 19.9
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 18.0
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 17.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 17.1
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 16.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 16.1
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 14.9
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 14.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 14.7
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 14.7
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 14.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 15.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 15.6
FF:10158-103A5 76 years, female 15.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 6.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 5.7
Samples: 4

Max nTPM: 6.2
Min nTPM: 4.9
Sample A Female 6.2
Sample B Female 4.9
Sample C Male 5.6
Sample D Male 6.1
Midbrain
nTPM: 6.0
Samples: 4

Max nTPM: 8.3
Min nTPM: 4.8
Sample A Female 8.3
Sample B Female 4.9
Sample C Male 5.8
Sample D Male 4.8
Periaqueductal gray
nTPM: 5.1
Samples: 3

Max nTPM: 5.4
Min nTPM: 4.8
Sample B Female 5.4
Sample C Male 5.0
Sample D Male 4.8
Superior colliculi
nTPM: 5.9
Samples: 4

Max nTPM: 6.5
Min nTPM: 5.0
Sample A Female 6.5
Sample B Female 6.1
Sample C Male 5.0
Sample D Male 5.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 5.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 5.0
Samples: 4

Max nTPM: 5.4
Min nTPM: 4.2
Sample A Male 5.4
Sample B Male 4.2
Sample C Female 4.9
Sample D Female 5.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
69838515 Antisense, RP_050309_01_H08, Mouse strain C57BL/6J (56 days, male) 0.6

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