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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:65.0 nTPM
HPA Brain:74.4 nTPM
GTEx:65.0 nTPM
FANTOM5:90.5 Scaled Tags Per Million
Pig:132.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

74.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 69.7
2565 Male, age 75, midline 86.5
2816 Male, age 47, midline 78.7
1981 Female, age 72, midline 71.8
2194 Female, age 79, both hemispheres 59.3
2048 Male, age 55, midline 52.4
Cervical spinal cord, dorsal horn
nTPM: 68.5
2173 Female, age 72, unknown 85.6
2296 Male, age 66, both hemispheres 84.6
1877 Male, age 55, unknown 66.4
2069 Male, age 47, both hemispheres 66.4
2721 Male, age 90, both hemispheres 57.9
2297 Male, age 75, both hemispheres 49.9
Cervical spinal cord, ventral horn
nTPM: 74.4
2098 Female, age 72, unknown 85.9
2480 Male, age 75, both hemispheres 83.2
2809 Male, age 90, both hemispheres 73.5
2068 Male, age 55, unknown 70.7
2295 Male, age 66, both hemispheres 68.0
2820 Female, age 79, both hemispheres 64.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

65.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 65.0
Samples: 204

Max nTPM: 111.1
Min nTPM: 17.7
Std nTPM: 18.0
Median nTPM: 64.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 111.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 111.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 106.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 105.0
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 104.6
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 103.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 102.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 101.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 100.9
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 99.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 99.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 93.1
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 93.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 92.9
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 92.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 91.9
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 88.8
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 87.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 87.4
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 87.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 86.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 86.2
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 85.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 85.2
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 84.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 84.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 84.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 84.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 83.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 83.4
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 83.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 83.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 82.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 81.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 81.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 80.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 80.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 80.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 80.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 79.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 79.2
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 79.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 78.6
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 78.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 78.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 78.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 78.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 78.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 77.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 77.7
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 77.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 77.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 77.3
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 76.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 76.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 76.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 76.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 75.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 75.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 75.5
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 75.3
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 75.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 75.0
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 74.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 74.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 74.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 74.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 74.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 73.8
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 73.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 73.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 73.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 72.5
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 72.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 72.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 71.9
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 71.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 71.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 71.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 71.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 71.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 70.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 70.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 70.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 70.4
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 69.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 69.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 69.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 69.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 69.2
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 69.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 69.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 68.3
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 68.0
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 67.9
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 67.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 66.9
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 66.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 66.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 66.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 65.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 64.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 64.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 64.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 64.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 63.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 63.3
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 63.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 63.0
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 62.6
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 62.4
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 61.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 61.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 61.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 61.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 60.9
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 60.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 60.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 60.2
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 60.2
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 60.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 59.3
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 58.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 57.9
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 57.8
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 57.7
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 57.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 57.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 57.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 57.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 57.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 57.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 56.9
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 56.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 56.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 56.4
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 56.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 56.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 56.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 56.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 55.7
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 55.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 55.1
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 54.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 54.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 53.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 53.8
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 53.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 53.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 53.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 51.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 51.2
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 51.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 50.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 50.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 50.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 50.0
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 49.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 49.4
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 49.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 48.9
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 48.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 48.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 48.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 48.2
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 48.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 48.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 47.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 47.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 47.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 45.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 45.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 44.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 44.5
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 44.4
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 44.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 44.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 44.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 43.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 43.4
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 43.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 42.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 42.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 42.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 42.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 42.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 41.6
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 40.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 39.8
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 39.8
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 39.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 39.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 38.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 36.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 36.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 35.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 34.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 34.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 33.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 32.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 31.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 31.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 24.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 17.7
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

90.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 90.5
FF:10181-103D1 60 years, female 106.4
FF:10159-103A6 76 years, female 74.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

132.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 111.1
Samples: 4

Max nTPM: 123.5
Min nTPM: 102.2
Sample A Female 102.2
Sample B Female 108.3
Sample C Male 123.5
Sample D Male 110.2
Ventral spinal cord
nTPM: 132.5
Samples: 4

Max nTPM: 138.0
Min nTPM: 127.2
Sample A Female 127.2
Sample B Female 138.0
Sample C Male 129.8
Sample D Male 135.0

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