HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:36.6 nTPM
HPA Brain:41.2 nTPM
GTEx:36.6 nTPM
FANTOM5:15.3 Scaled Tags Per Million
Pig:11.4 nTPM
Mouse:10.0 nTPM
Allen mouse:8.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA017340
Glial cells Low
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 41.2
Sample id Sample description nTPM
Hippocampus
nTPM: 38.8
2529 Female, age 94, left hemisphere 43.8
2148 Female, age 91, left hemisphere 43.6
1911 Female, age 85, right hemisphere 42.6
2621 Female, age 67, right hemisphere 36.0
1855 Male, age 76, left hemisphere 35.2
1898 Male, age 80, left hemisphere 31.5
Dentate gyrus
nTPM: 40.1
2528 Male, age 74, both hemispheres 45.1
2530 Female, age 94, left hemisphere 44.0
2531 Female, age 67, both hemispheres 40.8
2246 Female, age 85, both hemispheres 38.0
1927 Female, age 91, both hemispheres 37.1
2010 Male, age 76, both hemispheres 35.7
Entorhinal gyrus
nTPM: 40.9
2117 Female, age 91, right hemisphere 47.3
2764 Male, age 80, right hemisphere 44.6
2613 Female, age 94, left hemisphere 40.6
1938 Female, age 85, left hemisphere 38.6
2686 Male, age 75, right hemisphere 37.9
1787 Male, age 76, left hemisphere 36.6
Hippocampus, CA1
nTPM: 34.6
2527 Male, age 74, both hemispheres 39.7
2082 Female, age 91, right hemisphere 37.6
1873 Female, age 85, both hemispheres 34.9
2045 Male, age 76, both hemispheres 30.5
2749 Male, age 80, left hemisphere 30.3
Hippocampus, CA2
nTPM: 38.0
1963 Male, age 80, left hemisphere 44.2
2437 Female, age 94, left hemisphere 40.9
2249 Male, age 74, both hemispheres 40.4
1940 Female, age 85, left hemisphere 37.4
2113 Female, age 91, right hemisphere 37.1
1892 Male, age 76, both hemispheres 28.0
Hippocampus, CA3
nTPM: 35.6
1891 Female, age 85, both hemispheres 38.8
2861 Female, age 67, both hemispheres 38.6
2436 Male, age 74, both hemispheres 37.7
2620 Female, age 94, left hemisphere 34.0
1867 Male, age 76, both hemispheres 32.6
2137 Male, age 80, left hemisphere 32.0
Parahippocampal cortex
nTPM: 37.9
2532 Female, age 72, left hemisphere 45.1
1990 Female, age 91, right hemisphere 43.5
2622 Female, age 67, right hemisphere 41.7
2692 Male, age 74, both hemispheres 40.4
2245 Female, age 91, both hemispheres 37.7
1933 Female, age 85, both hemispheres 37.1
2250 Female, age 67, right hemisphere 36.0
1850 Male, age 80, both hemispheres 34.3
2018 Male, age 76, both hemispheres 34.1
2693 Female, age 94, both hemispheres 29.4
Perirhinal gyrus
nTPM: 35.1
1794 Male, age 80, right hemisphere 36.6
2848 Male, age 76, right hemisphere 36.5
2521 Female, age 94, right hemisphere 36.1
1847 Female, age 91, left hemisphere 33.6
1841 Female, age 85, right hemisphere 32.5
Subiculum
nTPM: 41.2
2438 Female, age 94, left hemisphere 43.5
2729 Female, age 91, right hemisphere 43.0
1977 Female, age 85, both hemispheres 41.7
2042 Male, age 76, both hemispheres 41.3
2619 Male, age 74, both hemispheres 39.4
1901 Male, age 80, both hemispheres 38.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 36.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 36.6
Samples: 255

Max nTPM: 95.0
Min nTPM: 20.7
Std nTPM: 8.1
Median nTPM: 36.2
GTEX-14E6C-0011-R1a-SM-G8W86 40-49 years, male 95.0
GTEX-1JJ6O-0011-R1b-SM-F2I2M 60-69 years, male 68.0
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 57.3
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 56.7
GTEX-14DAQ-0011-R1a-SM-G8W85 60-69 years, female 56.1
GTEX-ZAJG-0011-R1a-SM-GQ1CV 50-59 years, female 51.6
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 50.3
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 50.1
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 49.7
GTEX-1LKK1-0011-R1b-SM-F2TAF 50-59 years, female 49.0
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 48.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 15.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 15.3
FF:10153-102I9 76 years, female 23.4
FF:10169-103B7 60 years, female 7.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 11.4
Pig sample Sample description nTPM
Subiculum
nTPM: 10.6
Samples: 4

Max nTPM: 11.5
Min nTPM: 9.8
Sample A Female 11.5
Sample B Female 11.1
Sample C Male 9.8
Sample D Male 10.0
Dorsal hippocampus
nTPM: 10.3
Samples: 4

Max nTPM: 11.3
Min nTPM: 9.0
Sample A Female 11.3
Sample B Female 10.8
Sample C Male 10.0
Sample D Male 9.0
Entorhinal cortex
nTPM: 10.4
Samples: 4

Max nTPM: 11.1
Min nTPM: 8.9
Sample A Female 8.9
Sample B Female 11.1
Sample C Male 11.1
Sample D Male 10.3
Ventral hippocampus
nTPM: 11.4
Samples: 4

Max nTPM: 13.2
Min nTPM: 10.0
Sample A Female 10.0
Sample B Female 11.7
Sample C Male 13.2
Sample D Male 10.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 10.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 8.6
Samples: 4

Max nTPM: 9.5
Min nTPM: 7.8
Sample A Male 7.8
Sample B Male 8.8
Sample C Female 8.4
Sample D Female 9.5
Hippocampal formation
nTPM: 10.0
Samples: 4

Max nTPM: 12.1
Min nTPM: 8.4
Sample A Male 8.4
Sample B Male 8.7
Sample C Female 10.7
Sample D Female 12.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 8.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 8.0
69173262 Antisense, RP_050329_01_C07, Mouse strain C57BL/6J (56 days, male) 8.0

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