MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:35.6 nTPM
HPA Brain:47.9 nTPM
GTEx:35.6 nTPM
FANTOM5:29.6 Scaled Tags Per Million
Pig:14.1 nTPM
Mouse:7.8 nTPM
Allen mouse:6.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 47.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 45.9
2586 Male, age 75, left hemisphere 57.1
2828 Female, age 72, unknown 50.0
2019 Male, age 18, unknown 47.7
1830 Male, age 51, unknown 45.5
1870 Female, age 42, unknown 44.1
2411 Female, age 72, unknown 44.1
1833 Male, age 53, unknown 43.2
1827 Male, age 72, unknown 43.1
2219 Male, age 76, both hemispheres 42.6
2666 Male, age 74, left hemisphere 41.6
Dorsal raphe nucleus
nTPM: 41.0
2750 Male, age 76, both hemispheres 47.9
2047 Male, age 72, unknown 40.2
2016 Female, age 72, unknown 39.9
2298 Female, age 72, unknown 38.9
1828 Male, age 53, unknown 38.2
Inferior colliculus
nTPM: 41.3
1890 Male, age 53, unknown 43.4
2097 Female, age 72, unknown 43.0
1848 Female, age 42, unknown 40.4
2849 Male, age 72, unknown 38.5
Median raphe nucleus
nTPM: 36.7
2220 Male, age 76, midline 36.7
Periaquaductal grey, anterior
nTPM: 46.7
2502 Female, age 75, unknown 49.8
1795 Male, age 51, unknown 47.4
1947 Male, age 18, unknown 43.0
Periaquaductal grey, dorsal
nTPM: 37.5
2464 Female, age 72, unknown 44.2
1831 Male, age 72, unknown 37.4
2850 Male, age 76, both hemispheres 35.3
1840 Male, age 53, unknown 33.0
Periaquaductal grey, lateral
nTPM: 42.4
2140 Male, age 76, both hemispheres 45.1
2272 Male, age 74, both hemispheres 41.5
2053 Male, age 18, unknown 40.5
Pretectal area
nTPM: 41.9
2316 Male, age 76, right hemisphere 52.9
2825 Male, age 18, unknown 46.5
2407 Male, age 75, both hemispheres 44.3
2007 Male, age 72, unknown 42.9
2273 Male, age 74, both hemispheres 41.0
2224 Female, age 72, unknown 40.3
1815 Male, age 53, unknown 40.2
1816 Male, age 51, unknown 38.8
1817 Female, age 42, unknown 38.1
2667 Female, age 75, unknown 38.0
1944 Female, age 72, unknown 37.6
Red nucleus
nTPM: 47.9
1904 Male, age 53, unknown 53.3
2227 Male, age 72, unknown 52.2
2503 Female, age 72, unknown 51.7
2584 Male, age 75, left hemisphere 51.7
2785 Male, age 18, unknown 50.6
2769 Male, age 72, unknown 49.3
1865 Male, age 51, unknown 49.2
2588 Male, age 74, left hemisphere 48.1
1954 Female, age 42, unknown 46.2
2823 Male, age 76, right hemisphere 43.7
2725 Female, age 75, unknown 40.5
1821 Female, age 72, unknown 38.7
Substantia nigra
nTPM: 39.0
2590 Female, age 75, unknown 46.4
2583 Male, age 75, right hemisphere 44.4
1941 Male, age 53, unknown 42.1
1889 Female, age 72, unknown 40.1
1851 Male, age 51, unknown 37.8
2241 Male, age 72, unknown 37.2
2665 Male, age 74, both hemispheres 36.3
2699 Male, age 18, unknown 36.2
1916 Female, age 42, unknown 36.0
2409 Female, age 72, unknown 33.5
Superior colliculus
nTPM: 43.2
1913 Female, age 42, unknown 52.4
1995 Male, age 72, unknown 44.5
2668 Female, age 75, unknown 43.6
2664 Male, age 75, both hemispheres 43.2
1796 Male, age 53, unknown 42.5
2261 Male, age 18, unknown 42.5
2087 Female, age 72, unknown 42.3
1839 Male, age 51, unknown 41.7
1895 Male, age 76, right hemisphere 40.9
2587 Male, age 74, left hemisphere 38.7
Ventral tegmental area
nTPM: 40.3
1942 Male, age 51, unknown 43.8
2021 Male, age 53, unknown 42.4
2223 Female, age 72, unknown 41.3
2410 Female, age 72, unknown 39.8
2218 Male, age 76, both hemispheres 37.2
1915 Female, age 42, unknown 37.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 35.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 35.6
Samples: 183

Max nTPM: 79.0
Min nTPM: 18.9
Std nTPM: 9.1
Median nTPM: 33.6
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 79.0
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 74.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 66.6
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 58.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 58.0
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 57.1
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 54.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 54.2
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 54.2
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 52.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 49.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 29.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 29.6
FF:10158-103A5 76 years, female 29.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 14.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 13.2
Samples: 4

Max nTPM: 14.0
Min nTPM: 11.3
Sample A Female 13.6
Sample B Female 13.7
Sample C Male 11.3
Sample D Male 14.0
Midbrain
nTPM: 14.1
Samples: 4

Max nTPM: 16.4
Min nTPM: 13.0
Sample A Female 16.4
Sample B Female 13.0
Sample C Male 13.3
Sample D Male 13.6
Periaqueductal gray
nTPM: 13.1
Samples: 3

Max nTPM: 14.2
Min nTPM: 12.5
Sample B Female 14.2
Sample C Male 12.5
Sample D Male 12.7
Superior colliculi
nTPM: 13.4
Samples: 4

Max nTPM: 14.7
Min nTPM: 11.1
Sample A Female 13.1
Sample B Female 14.7
Sample C Male 11.1
Sample D Male 14.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 7.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 7.8
Samples: 4

Max nTPM: 8.6
Min nTPM: 6.7
Sample A Male 8.6
Sample B Male 7.1
Sample C Female 6.7
Sample D Female 8.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 6.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.3
69173262 Antisense, RP_050329_01_C07, Mouse strain C57BL/6J (56 days, male) 6.3

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