MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.3 nTPM
HPA Brain:37.8 nTPM
GTEx:11.3 nTPM
FANTOM5:10.0 Scaled Tags Per Million
Mouse:21.7 nTPM
Allen mouse:0.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 37.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 22.7
2586 Male, age 75, left hemisphere 32.1
2828 Female, age 72, unknown 25.9
1827 Male, age 72, unknown 24.5
2411 Female, age 72, unknown 23.0
1833 Male, age 53, unknown 22.3
2219 Male, age 76, both hemispheres 21.4
1870 Female, age 42, unknown 21.0
2666 Male, age 74, left hemisphere 19.9
1830 Male, age 51, unknown 19.1
2019 Male, age 18, unknown 18.1
Dorsal raphe nucleus
nTPM: 34.4
2047 Male, age 72, unknown 48.3
2298 Female, age 72, unknown 33.4
2016 Female, age 72, unknown 32.2
1828 Male, age 53, unknown 30.4
2750 Male, age 76, both hemispheres 27.6
Inferior colliculus
nTPM: 32.9
2097 Female, age 72, unknown 36.2
1890 Male, age 53, unknown 34.3
1848 Female, age 42, unknown 33.1
2849 Male, age 72, unknown 28.2
Median raphe nucleus
nTPM: 37.8
2220 Male, age 76, midline 37.8
Periaquaductal grey, anterior
nTPM: 26.9
2502 Female, age 75, unknown 36.5
1795 Male, age 51, unknown 24.5
1947 Male, age 18, unknown 19.5
Periaquaductal grey, dorsal
nTPM: 30.1
1840 Male, age 53, unknown 39.9
2464 Female, age 72, unknown 31.3
2850 Male, age 76, both hemispheres 27.2
1831 Male, age 72, unknown 22.1
Periaquaductal grey, lateral
nTPM: 24.0
2053 Male, age 18, unknown 27.7
2140 Male, age 76, both hemispheres 26.4
2272 Male, age 74, both hemispheres 18.0
Pretectal area
nTPM: 23.3
1816 Male, age 51, unknown 31.7
1944 Female, age 72, unknown 30.0
2825 Male, age 18, unknown 25.2
2224 Female, age 72, unknown 25.0
2273 Male, age 74, both hemispheres 23.1
1817 Female, age 42, unknown 22.9
2667 Female, age 75, unknown 22.2
1815 Male, age 53, unknown 20.4
2407 Male, age 75, both hemispheres 20.4
2007 Male, age 72, unknown 17.8
2316 Male, age 76, right hemisphere 17.7
Red nucleus
nTPM: 21.9
1954 Female, age 42, unknown 27.2
1821 Female, age 72, unknown 25.4
2588 Male, age 74, left hemisphere 23.9
2503 Female, age 72, unknown 22.8
2227 Male, age 72, unknown 22.1
2769 Male, age 72, unknown 22.1
2725 Female, age 75, unknown 22.0
2823 Male, age 76, right hemisphere 22.0
1904 Male, age 53, unknown 20.8
1865 Male, age 51, unknown 19.5
2584 Male, age 75, left hemisphere 19.0
2785 Male, age 18, unknown 15.9
Substantia nigra
nTPM: 30.6
1916 Female, age 42, unknown 47.2
2241 Male, age 72, unknown 45.3
2699 Male, age 18, unknown 35.8
1941 Male, age 53, unknown 30.1
1851 Male, age 51, unknown 29.6
2409 Female, age 72, unknown 28.3
1889 Female, age 72, unknown 26.3
2583 Male, age 75, right hemisphere 22.5
2665 Male, age 74, both hemispheres 20.3
2590 Female, age 75, unknown 20.0
Superior colliculus
nTPM: 24.5
2261 Male, age 18, unknown 33.9
2664 Male, age 75, both hemispheres 32.2
2087 Female, age 72, unknown 28.7
2668 Female, age 75, unknown 25.5
1796 Male, age 53, unknown 23.6
1839 Male, age 51, unknown 23.1
2587 Male, age 74, left hemisphere 21.9
1913 Female, age 42, unknown 20.8
1995 Male, age 72, unknown 18.8
1895 Male, age 76, right hemisphere 16.8
Ventral tegmental area
nTPM: 30.3
1915 Female, age 42, unknown 35.8
2223 Female, age 72, unknown 33.8
1942 Male, age 51, unknown 31.0
2218 Male, age 76, both hemispheres 28.2
2021 Male, age 53, unknown 27.6
2410 Female, age 72, unknown 25.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 11.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.3
Samples: 183

Max nTPM: 24.5
Min nTPM: 3.9
Std nTPM: 3.7
Median nTPM: 11.1
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 24.5
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 22.8
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 22.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 20.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 20.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 19.7
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 19.1
GTEX-1RQEC-0011-R2b-SM-EY5ZT 60-69 years, male 18.7
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 18.2
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 18.0
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 17.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 10.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 10.0
FF:10158-103A5 76 years, female 10.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 21.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 21.7
Samples: 4

Max nTPM: 23.5
Min nTPM: 20.0
Sample A Male 20.8
Sample B Male 23.5
Sample C Female 20.0
Sample D Female 22.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
73497259 Antisense, RP_051121_01_B12, Mouse strain C57BL/6J (56 days, male) 0.1
74641312 Antisense, RP_051121_01_B12, Mouse strain C57BL/6J (56 days, male) 0.1

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