A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
87.8
nTPM
Monaco:
233.3
nTPM
Schmiedel:
59.7
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
87.8
HPA sample
nTPM
NK-cell nTPM: 87.8
Samples: 6
Max nTPM: 106.9
Min nTPM: 76.9
P10809_1013
79.0
P10809_1033
76.9
P10809_1052
106.9
P10809_1071
89.7
P10809_1093
94.9
P10809_1103
79.3
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
233.3
Monaco sample
nTPM
NK-cell nTPM: 233.3
Samples: 4
Max nTPM: 315.5
Min nTPM: 177.7
RHH5316_R3683
177.7
RHH5224_R3596
315.5
RHH5253_R3625
204.3
RHH5282_R3654
235.8
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
59.7
Schmiedel sample id
TPM
NK-cell TPM: 59.7
Samples: 90
Max TPM: 88.4
Min TPM: 39.2
NK_1
88.4
NK_2
84.2
NK_3
81.7
NK_4
80.6
NK_5
80.0
NK_6
76.7
NK_7
76.6
NK_8
72.1
NK_9
69.8
NK_10
69.2
NK_11
69.0
NK_12
69.0
NK_13
68.8
NK_14
68.7
NK_15
68.6
NK_16
68.1
NK_17
67.1
NK_18
66.9
NK_19
66.9
NK_20
66.6
NK_21
66.3
NK_22
66.0
NK_23
65.9
NK_24
64.6
NK_25
63.9
NK_26
63.7
NK_27
63.3
NK_28
63.2
NK_29
63.1
NK_30
63.1
NK_31
62.8
NK_32
61.9
NK_33
61.7
NK_34
61.1
NK_35
61.0
NK_36
60.9
NK_37
60.9
NK_38
60.4
NK_39
60.0
NK_40
59.8
NK_41
59.7
NK_42
59.7
NK_43
59.6
NK_44
59.3
NK_45
59.2
NK_46
59.2
NK_47
59.1
NK_48
58.8
NK_49
58.8
NK_50
57.8
NK_51
57.8
NK_52
57.8
NK_53
57.6
NK_54
57.1
NK_55
57.0
NK_56
56.9
NK_57
56.8
NK_58
56.6
NK_59
56.2
NK_60
55.2
NK_61
55.1
NK_62
55.0
NK_63
54.8
NK_64
54.5
NK_65
54.0
NK_66
53.7
NK_67
52.8
NK_68
52.7
NK_69
52.6
NK_70
52.5
NK_71
52.1
NK_72
52.1
NK_73
51.7
NK_74
51.7
NK_75
51.6
NK_76
51.2
NK_77
50.8
NK_78
49.8
NK_79
49.1
NK_80
49.0
NK_81
48.9
NK_82
48.4
NK_83
47.2
NK_84
46.4
NK_85
46.3
NK_86
46.1
NK_87
45.0
NK_88
44.6
NK_89
39.4
NK_90
39.2
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