A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
99.9
nTPM
Monaco:
240.5
nTPM
Schmiedel:
41.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
99.9
HPA sample
nTPM
Classical monocyte nTPM: 99.9
Samples: 6
Max nTPM: 135.4
Min nTPM: 78.9
P10809_1003
135.4
P10809_1020
114.1
P10809_1039
93.2
P10809_1058
78.9
P10809_1080
97.0
P10809_1107
80.8
Intermediate monocyte nTPM: 99.8
Samples: 6
Max nTPM: 120.7
Min nTPM: 76.8
P10809_1004
120.7
P10809_1023
103.4
P10809_1042
107.4
P10809_1061
110.0
P10809_1081
80.2
P10809_1108
76.8
Non-classical monocyte nTPM: 95.6
Samples: 5
Max nTPM: 134.5
Min nTPM: 66.9
P10809_1005
118.2
P10809_1053
134.5
P10809_1072
67.7
P10809_1082
66.9
P10809_1109
90.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
240.5
Monaco sample
nTPM
Classical monocyte nTPM: 240.6
Samples: 4
Max nTPM: 287.0
Min nTPM: 211.5
RHH5313_R3680
211.5
RHH5221_R3593
287.0
RHH5250_R3622
231.6
RHH5279_R3651
232.1
Intermediate monocyte nTPM: 207.2
Samples: 4
Max nTPM: 256.1
Min nTPM: 171.2
RHH5314_R3681
171.2
RHH5222_R3594
256.1
RHH5251_R3623
204.4
RHH5280_R3652
197.0
Non-classical monocyte nTPM: 220.5
Samples: 4
Max nTPM: 246.3
Min nTPM: 195.8
RHH5315_R3682
216.6
RHH5223_R3595
246.3
RHH5252_R3624
223.4
RHH5281_R3653
195.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
41.0
Schmiedel sample id
TPM
Classical monocyte TPM: 31.8
Samples: 91
Max TPM: 41.5
Min TPM: 20.9
MONOCYTES_1
41.5
MONOCYTES_2
40.9
MONOCYTES_3
40.7
MONOCYTES_4
40.0
MONOCYTES_5
39.9
MONOCYTES_6
39.8
MONOCYTES_7
39.5
MONOCYTES_8
38.8
MONOCYTES_9
37.8
MONOCYTES_10
37.8
MONOCYTES_11
37.8
MONOCYTES_12
37.5
MONOCYTES_13
37.3
MONOCYTES_14
37.3
MONOCYTES_15
37.2
MONOCYTES_16
37.2
MONOCYTES_17
36.5
MONOCYTES_18
36.2
MONOCYTES_19
36.1
MONOCYTES_20
36.1
MONOCYTES_21
36.0
MONOCYTES_22
35.1
MONOCYTES_23
35.0
MONOCYTES_24
34.9
MONOCYTES_25
34.9
MONOCYTES_26
34.8
MONOCYTES_27
34.5
MONOCYTES_28
34.5
MONOCYTES_29
34.1
MONOCYTES_30
34.0
MONOCYTES_31
33.9
MONOCYTES_32
33.8
MONOCYTES_33
33.7
MONOCYTES_34
33.6
MONOCYTES_35
33.6
MONOCYTES_36
33.4
MONOCYTES_37
33.2
MONOCYTES_38
33.0
MONOCYTES_39
32.5
MONOCYTES_40
32.2
MONOCYTES_41
32.2
MONOCYTES_42
32.2
MONOCYTES_43
32.1
MONOCYTES_44
32.1
MONOCYTES_45
31.8
MONOCYTES_46
31.7
MONOCYTES_47
31.4
MONOCYTES_48
31.4
MONOCYTES_49
31.1
MONOCYTES_50
30.9
MONOCYTES_51
30.7
MONOCYTES_52
30.4
MONOCYTES_53
30.2
MONOCYTES_54
30.1
MONOCYTES_55
30.0
MONOCYTES_56
29.8
MONOCYTES_57
29.7
MONOCYTES_58
29.4
MONOCYTES_59
29.3
MONOCYTES_60
29.3
MONOCYTES_61
29.2
MONOCYTES_62
29.2
MONOCYTES_63
29.2
MONOCYTES_64
29.2
MONOCYTES_65
28.8
MONOCYTES_66
28.8
MONOCYTES_67
28.7
MONOCYTES_68
28.5
MONOCYTES_69
28.4
MONOCYTES_70
28.4
MONOCYTES_71
27.9
MONOCYTES_72
27.9
MONOCYTES_73
27.7
MONOCYTES_74
27.5
MONOCYTES_75
27.3
MONOCYTES_76
27.3
MONOCYTES_77
27.0
MONOCYTES_78
26.9
MONOCYTES_79
26.8
MONOCYTES_80
26.4
MONOCYTES_81
26.4
MONOCYTES_82
26.2
MONOCYTES_83
26.2
MONOCYTES_84
25.2
MONOCYTES_85
25.2
MONOCYTES_86
24.9
MONOCYTES_87
24.4
MONOCYTES_88
24.2
MONOCYTES_89
23.9
MONOCYTES_90
23.3
MONOCYTES_91
20.9
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Non-classical monocyte TPM: 41.0
Samples: 90
Max TPM: 57.8
Min TPM: 30.3
M2_1
57.8
M2_2
57.2
M2_3
55.4
M2_4
54.0
M2_5
53.4
M2_6
53.3
M2_7
51.6
M2_8
51.5
M2_9
51.2
M2_10
49.8
M2_11
48.9
M2_12
48.6
M2_13
46.3
M2_14
46.1
M2_15
45.8
M2_16
45.7
M2_17
45.4
M2_18
45.3
M2_19
45.1
M2_20
45.1
M2_21
44.8
M2_22
44.8
M2_23
44.4
M2_24
44.2
M2_25
44.0
M2_26
44.0
M2_27
43.9
M2_28
43.7
M2_29
43.6
M2_30
42.7
M2_31
42.6
M2_32
42.5
M2_33
42.0
M2_34
42.0
M2_35
41.9
M2_36
41.7
M2_37
41.6
M2_38
41.6
M2_39
41.5
M2_40
41.3
M2_41
40.6
M2_42
40.4
M2_43
40.3
M2_44
40.3
M2_45
39.9
M2_46
39.8
M2_47
39.3
M2_48
39.3
M2_49
39.2
M2_50
39.1
M2_51
39.1
M2_52
39.0
M2_53
39.0
M2_54
38.9
M2_55
38.8
M2_56
38.7
M2_57
38.6
M2_58
38.4
M2_59
38.2
M2_60
37.9
M2_61
37.8
M2_62
37.5
M2_63
37.5
M2_64
37.5
M2_65
37.4
M2_66
36.5
M2_67
36.2
M2_68
36.1
M2_69
35.9
M2_70
35.6
M2_71
35.4
M2_72
35.4
M2_73
35.3
M2_74
35.3
M2_75
35.2
M2_76
35.2
M2_77
35.2
M2_78
35.2
M2_79
34.4
M2_80
34.2
M2_81
34.2
M2_82
34.2
M2_83
34.2
M2_84
34.1
M2_85
33.7
M2_86
33.2
M2_87
33.1
M2_88
32.5
M2_89
32.3
M2_90
30.3
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