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  • CAMK2N1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:570.4 nTPM
HPA Brain:500.9 nTPM
GTEx:570.4 nTPM
FANTOM5:1654.8 Scaled Tags Per Million
Pig:426.9 nTPM
Mouse:767.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

500.9
Sample id Sample description nTPM
Amygdala
nTPM: 271.8
2517 Female, age 94, left hemisphere 438.9
2814 Male, age 76, right hemisphere 264.2
2514 Male, age 75, right hemisphere 233.0
2695 Female, age 67, right hemisphere 226.3
1987 Female, age 91, left hemisphere 196.7
Basal amygdala
nTPM: 500.9
2827 Female, age 67, right hemisphere 687.3
2685 Female, age 94, left hemisphere 667.7
2110 Male, age 80, left hemisphere 583.6
1955 Male, age 76, both hemispheres 412.4
2609 Male, age 75, right hemisphere 338.3
2243 Female, age 91, right hemisphere 316.1
Central amygdala
nTPM: 401.1
2826 Female, age 94, left hemisphere 839.4
2239 Male, age 80, left hemisphere 464.9
2515 Male, age 75, right hemisphere 294.8
1905 Male, age 76, both hemispheres 218.4
2701 Female, age 91, right hemisphere 187.8
Corticomedial amygdala
nTPM: 416.8
2535 Female, age 67, right hemisphere 617.8
2829 Male, age 80, left hemisphere 576.9
2429 Female, age 94, left hemisphere 407.9
2240 Male, age 76, both hemispheres 379.2
2428 Male, age 75, right hemisphere 296.2
2242 Female, age 91, right hemisphere 222.7
Lateral amygdala
nTPM: 494.2
2534 Female, age 94, left hemisphere 826.2
2256 Male, age 80, left hemisphere 824.2
2830 Female, age 67, right hemisphere 402.4
2516 Male, age 75, right hemisphere 327.1
1883 Male, age 76, both hemispheres 298.8
2255 Female, age 91, right hemisphere 286.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

570.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 570.4
Samples: 181

Max nTPM: 1691.7
Min nTPM: 179.1
Std nTPM: 273.5
Median nTPM: 509.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1691.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1628.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1470.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1282.8
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 1194.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1142.9
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 1133.9
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 1121.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1101.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1099.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1070.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 1028.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1013.8
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 1005.7
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 986.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 936.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 933.3
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 915.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 913.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 894.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 894.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 877.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 877.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 871.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 855.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 840.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 828.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 820.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 819.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 816.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 814.4
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 813.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 812.4
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 805.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 796.1
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 789.6
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 786.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 772.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 754.9
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 745.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 740.2
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 721.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 716.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 713.4
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 710.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 705.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 702.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 699.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 694.3
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 685.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 680.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 675.5
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 671.4
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 662.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 661.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 658.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 653.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 646.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 645.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 636.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 636.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 635.8
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 634.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 631.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 631.3
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 620.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 619.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 618.1
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 616.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 615.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 614.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 609.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 604.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 602.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 601.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 594.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 593.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 591.6
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 588.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 582.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 562.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 556.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 554.6
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 540.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 539.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 537.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 532.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 525.0
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 512.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 510.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 509.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 508.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 502.8
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 501.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 497.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 496.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 496.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 494.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 491.6
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 486.2
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 482.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 482.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 469.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 468.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 460.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 458.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 452.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 452.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 452.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 452.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 448.5
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 447.7
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 446.8
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 446.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 441.3
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 432.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 428.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 428.7
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 426.2
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 422.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 421.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 418.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 415.7
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 405.3
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 399.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 397.7
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 396.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 394.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 385.7
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 384.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 383.5
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 379.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 376.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 375.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 375.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 369.5
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 364.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 362.3
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 361.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 358.3
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 357.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 356.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 339.6
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 332.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 328.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 324.0
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 323.5
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 323.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 323.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 322.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 322.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 320.1
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 319.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 313.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 308.5
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 305.0
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 303.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 302.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 300.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 297.1
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 288.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 284.2
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 275.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 271.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 260.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 256.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 255.2
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 253.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 249.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 244.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 242.0
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 218.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 212.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 212.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 205.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 201.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 193.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 185.2
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 183.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 180.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 179.1
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1654.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1654.8
FF:10151-102I7 76 years, female 1654.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

426.9
Pig sample Sample description nTPM
Amygdala
nTPM: 426.9
Samples: 4

Max nTPM: 609.3
Min nTPM: 276.6
Sample A Female 609.3
Sample B Female 449.3
Sample C Male 276.6
Sample D Male 372.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

767.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 767.2
Samples: 4

Max nTPM: 1078.7
Min nTPM: 550.0
Sample A Male 550.0
Sample B Male 778.1
Sample C Female 1078.7
Sample D Female 662.1

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