MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:198.9 nTPM
HPA Brain:258.9 nTPM
GTEx:198.9 nTPM
FANTOM5:785.3 Scaled Tags Per Million
Pig:312.1 nTPM
Mouse:184.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 258.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 226.1
2586 Male, age 75, left hemisphere 303.6
1827 Male, age 72, unknown 270.8
2828 Female, age 72, unknown 255.2
2219 Male, age 76, both hemispheres 250.4
1833 Male, age 53, unknown 240.7
2666 Male, age 74, left hemisphere 225.1
1830 Male, age 51, unknown 212.0
2411 Female, age 72, unknown 184.4
1870 Female, age 42, unknown 168.1
2019 Male, age 18, unknown 150.6
Dorsal raphe nucleus
nTPM: 183.5
2750 Male, age 76, both hemispheres 229.7
1828 Male, age 53, unknown 190.9
2047 Male, age 72, unknown 188.7
2298 Female, age 72, unknown 159.5
2016 Female, age 72, unknown 148.8
Inferior colliculus
nTPM: 232.7
2097 Female, age 72, unknown 333.3
2849 Male, age 72, unknown 215.9
1848 Female, age 42, unknown 197.9
1890 Male, age 53, unknown 183.6
Median raphe nucleus
nTPM: 258.9
2220 Male, age 76, midline 258.9
Periaquaductal grey, anterior
nTPM: 206.3
2502 Female, age 75, unknown 254.4
1795 Male, age 51, unknown 196.6
1947 Male, age 18, unknown 167.8
Periaquaductal grey, dorsal
nTPM: 176.1
2464 Female, age 72, unknown 205.5
1831 Male, age 72, unknown 193.0
2850 Male, age 76, both hemispheres 154.8
1840 Male, age 53, unknown 151.3
Periaquaductal grey, lateral
nTPM: 188.3
2053 Male, age 18, unknown 219.0
2272 Male, age 74, both hemispheres 192.2
2140 Male, age 76, both hemispheres 153.6
Pretectal area
nTPM: 239.5
1816 Male, age 51, unknown 340.2
1815 Male, age 53, unknown 337.7
1944 Female, age 72, unknown 298.5
2007 Male, age 72, unknown 281.6
1817 Female, age 42, unknown 257.8
2825 Male, age 18, unknown 212.4
2407 Male, age 75, both hemispheres 203.9
2224 Female, age 72, unknown 182.2
2316 Male, age 76, right hemisphere 180.1
2667 Female, age 75, unknown 178.8
2273 Male, age 74, both hemispheres 161.4
Red nucleus
nTPM: 212.0
2584 Male, age 75, left hemisphere 277.1
2588 Male, age 74, left hemisphere 273.4
2725 Female, age 75, unknown 232.3
1904 Male, age 53, unknown 227.8
2503 Female, age 72, unknown 206.0
2769 Male, age 72, unknown 205.9
2227 Male, age 72, unknown 205.8
2785 Male, age 18, unknown 200.6
1865 Male, age 51, unknown 193.5
1821 Female, age 72, unknown 188.2
1954 Female, age 42, unknown 170.3
2823 Male, age 76, right hemisphere 162.8
Substantia nigra
nTPM: 201.4
1889 Female, age 72, unknown 262.2
2583 Male, age 75, right hemisphere 241.5
2699 Male, age 18, unknown 215.9
2665 Male, age 74, both hemispheres 209.1
2590 Female, age 75, unknown 202.5
1851 Male, age 51, unknown 198.2
2409 Female, age 72, unknown 183.4
1916 Female, age 42, unknown 178.6
1941 Male, age 53, unknown 165.6
2241 Male, age 72, unknown 156.6
Superior colliculus
nTPM: 230.8
2261 Male, age 18, unknown 358.4
1796 Male, age 53, unknown 269.8
2087 Female, age 72, unknown 267.8
1913 Female, age 42, unknown 235.7
2668 Female, age 75, unknown 206.9
2587 Male, age 74, left hemisphere 205.4
1895 Male, age 76, right hemisphere 201.0
2664 Male, age 75, both hemispheres 191.0
1839 Male, age 51, unknown 190.7
1995 Male, age 72, unknown 181.7
Ventral tegmental area
nTPM: 214.2
2223 Female, age 72, unknown 310.7
2218 Male, age 76, both hemispheres 235.1
1915 Female, age 42, unknown 208.5
1942 Male, age 51, unknown 197.4
2410 Female, age 72, unknown 168.9
2021 Male, age 53, unknown 164.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 198.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 198.9
Samples: 183

Max nTPM: 852.3
Min nTPM: 36.3
Std nTPM: 96.6
Median nTPM: 181.0
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 852.3
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 578.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 464.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 443.8
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 421.3
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 415.4
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 401.5
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 376.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 375.3
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 370.7
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 366.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 785.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 785.3
FF:10158-103A5 76 years, female 785.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 312.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 189.7
Samples: 4

Max nTPM: 227.8
Min nTPM: 149.2
Sample A Female 227.8
Sample B Female 149.2
Sample C Male 203.5
Sample D Male 178.4
Midbrain
nTPM: 312.1
Samples: 4

Max nTPM: 621.8
Min nTPM: 172.0
Sample A Female 172.0
Sample B Female 175.3
Sample C Male 279.3
Sample D Male 621.8
Periaqueductal gray
nTPM: 164.3
Samples: 3

Max nTPM: 181.0
Min nTPM: 153.5
Sample B Female 153.5
Sample C Male 181.0
Sample D Male 158.5
Superior colliculi
nTPM: 256.9
Samples: 4

Max nTPM: 358.5
Min nTPM: 103.9
Sample A Female 358.5
Sample B Female 103.9
Sample C Male 296.2
Sample D Male 268.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 184.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 184.9
Samples: 4

Max nTPM: 195.6
Min nTPM: 179.2
Sample A Male 195.6
Sample B Male 179.2
Sample C Female 185.0
Sample D Female 179.8

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