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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1.2 nTPM
HPA Brain:4.0 nTPM
GTEx:1.2 nTPM
FANTOM5:1.6 Scaled Tags Per Million
Pig:4.2 nTPM
Mouse:0.6 nTPM
Allen mouse:0.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

4.0
Sample id Sample description nTPM
Amygdala
nTPM: 3.9
2514 Male, age 75, right hemisphere 6.4
1987 Female, age 91, left hemisphere 3.8
2695 Female, age 67, right hemisphere 3.6
2517 Female, age 94, left hemisphere 3.4
2814 Male, age 76, right hemisphere 2.6
Basal amygdala
nTPM: 2.9
2243 Female, age 91, right hemisphere 3.5
2110 Male, age 80, left hemisphere 3.2
1955 Male, age 76, both hemispheres 2.8
2827 Female, age 67, right hemisphere 2.8
2609 Male, age 75, right hemisphere 2.6
2685 Female, age 94, left hemisphere 2.6
Central amygdala
nTPM: 2.5
2701 Female, age 91, right hemisphere 3.3
2239 Male, age 80, left hemisphere 2.7
1905 Male, age 76, both hemispheres 2.3
2515 Male, age 75, right hemisphere 2.0
2826 Female, age 94, left hemisphere 2.0
Corticomedial amygdala
nTPM: 4.0
2428 Male, age 75, right hemisphere 5.1
2535 Female, age 67, right hemisphere 4.9
2242 Female, age 91, right hemisphere 4.1
2429 Female, age 94, left hemisphere 3.4
2829 Male, age 80, left hemisphere 3.4
2240 Male, age 76, both hemispheres 3.0
Lateral amygdala
nTPM: 2.9
2256 Male, age 80, left hemisphere 4.3
2255 Female, age 91, right hemisphere 3.5
1883 Male, age 76, both hemispheres 3.1
2534 Female, age 94, left hemisphere 2.5
2516 Male, age 75, right hemisphere 2.2
2830 Female, age 67, right hemisphere 1.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1.2
Samples: 152

Max nTPM: 2.7
Min nTPM: 0.2
Std nTPM: 0.5
Median nTPM: 1.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 2.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 2.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 2.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 2.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 2.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 2.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 2.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 2.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 2.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 2.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 2.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 2.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 2.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 2.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 2.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 2.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 1.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 1.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 1.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 1.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 1.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 1.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 1.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 1.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 1.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 1.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 1.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 1.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 1.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 1.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 1.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 1.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 1.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 1.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 1.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 1.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 1.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 1.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 1.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 1.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 1.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 1.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 1.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 1.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 1.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 1.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 1.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 1.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 1.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 1.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 1.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 1.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 1.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 1.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 1.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 1.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 1.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 0.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 0.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 0.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 0.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 0.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 0.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 0.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 0.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 0.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 0.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 0.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 0.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 0.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 0.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 0.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 0.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 0.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 0.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 0.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 0.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 0.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 0.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 0.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 0.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 0.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 0.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 0.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 0.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 0.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 0.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 0.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 0.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 0.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 0.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 0.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 0.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 0.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 0.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 0.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 0.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 0.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 0.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 0.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 0.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 0.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 0.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 0.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 0.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 0.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 0.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 0.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 0.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 0.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 0.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 0.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 0.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 0.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 0.2
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1.6
FF:10151-102I7 76 years, female 1.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

4.2
Pig sample Sample description nTPM
Amygdala
nTPM: 4.3
Samples: 4

Max nTPM: 5.9
Min nTPM: 3.6
Sample A Female 3.9
Sample B Female 5.9
Sample C Male 3.6
Sample D Male 3.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

0.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 0.6
Samples: 4

Max nTPM: 0.8
Min nTPM: 0.4
Sample A Male 0.4
Sample B Male 0.5
Sample C Female 0.8
Sample D Female 0.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.0
71021155 Antisense, RP_050526_02_H08, Mouse strain C57BL/6J (56 days, male) 0.0

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