A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3.1
nTPM
Monaco:
28.2
nTPM
Schmiedel:
58.3
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3.1
HPA sample
nTPM
NK-cell nTPM: 3.1
Samples: 6
Max nTPM: 5.3
Min nTPM: 0.0
P10809_1013
4.4
P10809_1033
5.3
P10809_1052
4.0
P10809_1071
4.3
P10809_1093
0.0
P10809_1103
0.8
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
28.2
Monaco sample
nTPM
NK-cell nTPM: 28.2
Samples: 4
Max nTPM: 33.8
Min nTPM: 20.2
RHH5316_R3683
30.2
RHH5224_R3596
28.4
RHH5253_R3625
33.8
RHH5282_R3654
20.2
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
58.3
Schmiedel sample id
TPM
NK-cell TPM: 58.3
Samples: 90
Max TPM: 90.1
Min TPM: 32.0
NK_1
90.1
NK_2
82.2
NK_3
80.2
NK_4
75.2
NK_5
72.6
NK_6
71.9
NK_7
71.6
NK_8
70.6
NK_9
69.6
NK_10
69.5
NK_11
69.0
NK_12
68.6
NK_13
68.2
NK_14
67.0
NK_15
66.2
NK_16
66.1
NK_17
66.1
NK_18
64.9
NK_19
64.9
NK_20
64.6
NK_21
63.9
NK_22
63.6
NK_23
63.4
NK_24
63.4
NK_25
63.3
NK_26
63.0
NK_27
62.3
NK_28
62.1
NK_29
61.5
NK_30
61.5
NK_31
60.0
NK_32
59.7
NK_33
59.7
NK_34
59.4
NK_35
59.1
NK_36
58.8
NK_37
58.6
NK_38
58.5
NK_39
58.4
NK_40
58.3
NK_41
58.3
NK_42
58.3
NK_43
57.8
NK_44
57.8
NK_45
57.6
NK_46
57.1
NK_47
56.9
NK_48
56.8
NK_49
56.7
NK_50
56.7
NK_51
56.0
NK_52
55.9
NK_53
55.9
NK_54
55.7
NK_55
55.5
NK_56
55.3
NK_57
55.3
NK_58
55.0
NK_59
54.7
NK_60
54.6
NK_61
53.8
NK_62
53.8
NK_63
53.3
NK_64
53.1
NK_65
52.8
NK_66
52.8
NK_67
52.7
NK_68
52.4
NK_69
52.4
NK_70
52.2
NK_71
51.6
NK_72
51.5
NK_73
51.4
NK_74
51.4
NK_75
50.8
NK_76
50.7
NK_77
50.7
NK_78
50.3
NK_79
50.1
NK_80
49.4
NK_81
49.0
NK_82
48.3
NK_83
48.1
NK_84
48.1
NK_85
47.9
NK_86
47.8
NK_87
47.3
NK_88
39.6
NK_89
38.8
NK_90
32.0
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