A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3.9
nTPM
Monaco:
25.5
nTPM
Schmiedel:
31.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3.9
HPA sample
nTPM
Classical monocyte nTPM: 3.9
Samples: 6
Max nTPM: 4.8
Min nTPM: 3.3
P10809_1003
4.0
P10809_1020
4.3
P10809_1039
3.3
P10809_1058
4.8
P10809_1080
3.7
P10809_1107
3.5
Intermediate monocyte nTPM: 3.4
Samples: 6
Max nTPM: 5.7
Min nTPM: 0.9
P10809_1004
5.7
P10809_1023
0.9
P10809_1042
2.5
P10809_1061
3.5
P10809_1081
3.5
P10809_1108
4.3
Non-classical monocyte nTPM: 4.0
Samples: 5
Max nTPM: 5.7
Min nTPM: 1.8
P10809_1005
5.7
P10809_1053
4.7
P10809_1072
5.2
P10809_1082
1.8
P10809_1109
2.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
25.5
Monaco sample
nTPM
Classical monocyte nTPM: 25.5
Samples: 4
Max nTPM: 32.5
Min nTPM: 21.3
RHH5313_R3680
23.7
RHH5221_R3593
32.5
RHH5250_R3622
21.3
RHH5279_R3651
24.5
Intermediate monocyte nTPM: 15.7
Samples: 4
Max nTPM: 16.5
Min nTPM: 15.0
RHH5314_R3681
16.0
RHH5222_R3594
15.1
RHH5251_R3623
16.5
RHH5280_R3652
15.0
Non-classical monocyte nTPM: 22.4
Samples: 4
Max nTPM: 30.3
Min nTPM: 16.0
RHH5315_R3682
20.4
RHH5223_R3595
30.3
RHH5252_R3624
16.0
RHH5281_R3653
22.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
31.1
Schmiedel sample id
TPM
Classical monocyte TPM: 31.1
Samples: 91
Max TPM: 39.5
Min TPM: 22.8
MONOCYTES_1
39.5
MONOCYTES_2
39.3
MONOCYTES_3
37.8
MONOCYTES_4
37.5
MONOCYTES_5
36.5
MONOCYTES_6
36.3
MONOCYTES_7
35.9
MONOCYTES_8
35.5
MONOCYTES_9
35.3
MONOCYTES_10
35.0
MONOCYTES_11
34.8
MONOCYTES_12
34.6
MONOCYTES_13
34.6
MONOCYTES_14
34.3
MONOCYTES_15
34.3
MONOCYTES_16
34.3
MONOCYTES_17
34.1
MONOCYTES_18
34.1
MONOCYTES_19
34.1
MONOCYTES_20
34.1
MONOCYTES_21
34.0
MONOCYTES_22
34.0
MONOCYTES_23
34.0
MONOCYTES_24
33.9
MONOCYTES_25
33.9
MONOCYTES_26
33.7
MONOCYTES_27
33.7
MONOCYTES_28
33.2
MONOCYTES_29
33.1
MONOCYTES_30
33.0
MONOCYTES_31
32.8
MONOCYTES_32
32.8
MONOCYTES_33
32.8
MONOCYTES_34
32.8
MONOCYTES_35
32.7
MONOCYTES_36
32.7
MONOCYTES_37
32.5
MONOCYTES_38
32.0
MONOCYTES_39
31.9
MONOCYTES_40
31.8
MONOCYTES_41
31.8
MONOCYTES_42
31.6
MONOCYTES_43
31.5
MONOCYTES_44
31.5
MONOCYTES_45
31.4
MONOCYTES_46
31.3
MONOCYTES_47
31.2
MONOCYTES_48
31.1
MONOCYTES_49
30.8
MONOCYTES_50
30.8
MONOCYTES_51
30.5
MONOCYTES_52
30.4
MONOCYTES_53
30.3
MONOCYTES_54
30.3
MONOCYTES_55
30.1
MONOCYTES_56
30.0
MONOCYTES_57
29.9
MONOCYTES_58
29.8
MONOCYTES_59
29.8
MONOCYTES_60
29.8
MONOCYTES_61
29.7
MONOCYTES_62
29.5
MONOCYTES_63
29.5
MONOCYTES_64
29.3
MONOCYTES_65
29.2
MONOCYTES_66
29.2
MONOCYTES_67
29.1
MONOCYTES_68
28.8
MONOCYTES_69
28.7
MONOCYTES_70
28.7
MONOCYTES_71
28.6
MONOCYTES_72
28.5
MONOCYTES_73
28.3
MONOCYTES_74
28.3
MONOCYTES_75
27.9
MONOCYTES_76
27.6
MONOCYTES_77
27.4
MONOCYTES_78
26.9
MONOCYTES_79
26.9
MONOCYTES_80
26.7
MONOCYTES_81
26.6
MONOCYTES_82
26.5
MONOCYTES_83
26.2
MONOCYTES_84
26.1
MONOCYTES_85
25.8
MONOCYTES_86
25.8
MONOCYTES_87
25.6
MONOCYTES_88
25.4
MONOCYTES_89
23.7
MONOCYTES_90
23.7
MONOCYTES_91
22.8
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Non-classical monocyte TPM: 25.2
Samples: 90
Max TPM: 34.8
Min TPM: 16.3
M2_1
34.8
M2_2
34.6
M2_3
31.9
M2_4
31.5
M2_5
31.4
M2_6
30.2
M2_7
30.2
M2_8
30.2
M2_9
29.6
M2_10
29.1
M2_11
28.8
M2_12
28.7
M2_13
28.6
M2_14
28.6
M2_15
28.5
M2_16
28.5
M2_17
28.1
M2_18
28.1
M2_19
27.9
M2_20
27.9
M2_21
27.7
M2_22
27.6
M2_23
27.2
M2_24
27.2
M2_25
27.1
M2_26
27.0
M2_27
26.9
M2_28
26.9
M2_29
26.7
M2_30
26.6
M2_31
26.6
M2_32
26.4
M2_33
26.2
M2_34
26.0
M2_35
25.9
M2_36
25.8
M2_37
25.7
M2_38
25.5
M2_39
25.4
M2_40
25.4
M2_41
25.3
M2_42
25.3
M2_43
25.2
M2_44
25.1
M2_45
25.1
M2_46
25.0
M2_47
24.8
M2_48
24.7
M2_49
24.7
M2_50
24.6
M2_51
24.6
M2_52
24.6
M2_53
24.4
M2_54
24.3
M2_55
24.3
M2_56
24.1
M2_57
24.1
M2_58
24.0
M2_59
23.8
M2_60
23.8
M2_61
23.8
M2_62
23.6
M2_63
23.6
M2_64
23.6
M2_65
23.5
M2_66
23.2
M2_67
23.1
M2_68
23.1
M2_69
23.0
M2_70
22.9
M2_71
22.8
M2_72
22.8
M2_73
22.7
M2_74
22.7
M2_75
22.5
M2_76
22.5
M2_77
22.3
M2_78
22.2
M2_79
22.0
M2_80
21.8
M2_81
21.6
M2_82
20.5
M2_83
20.0
M2_84
20.0
M2_85
19.8
M2_86
19.3
M2_87
19.1
M2_88
17.9
M2_89
17.7
M2_90
16.3
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