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  • VSNL1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:160.2 nTPM
HPA Brain:205.7 nTPM
GTEx:160.2 nTPM
FANTOM5:497.8 Scaled Tags Per Million
Pig:188.5 nTPM
Mouse:532.9 nTPM
Allen mouse:5.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

205.7
Sample id Sample description nTPM
Amygdala
nTPM: 176.6
2814 Male, age 76, right hemisphere 263.8
1987 Female, age 91, left hemisphere 217.5
2514 Male, age 75, right hemisphere 150.9
2517 Female, age 94, left hemisphere 136.7
2695 Female, age 67, right hemisphere 114.0
Basal amygdala
nTPM: 200.5
2243 Female, age 91, right hemisphere 326.1
2110 Male, age 80, left hemisphere 217.0
2685 Female, age 94, left hemisphere 213.1
1955 Male, age 76, both hemispheres 180.8
2609 Male, age 75, right hemisphere 160.6
2827 Female, age 67, right hemisphere 105.6
Central amygdala
nTPM: 205.7
2701 Female, age 91, right hemisphere 279.7
1905 Male, age 76, both hemispheres 212.7
2826 Female, age 94, left hemisphere 202.9
2239 Male, age 80, left hemisphere 202.6
2515 Male, age 75, right hemisphere 130.9
Corticomedial amygdala
nTPM: 184.0
2829 Male, age 80, left hemisphere 244.7
2429 Female, age 94, left hemisphere 200.0
2428 Male, age 75, right hemisphere 173.1
2240 Male, age 76, both hemispheres 171.4
2242 Female, age 91, right hemisphere 162.7
2535 Female, age 67, right hemisphere 152.0
Lateral amygdala
nTPM: 187.9
2534 Female, age 94, left hemisphere 304.1
2255 Female, age 91, right hemisphere 277.3
1883 Male, age 76, both hemispheres 201.1
2256 Male, age 80, left hemisphere 194.7
2516 Male, age 75, right hemisphere 77.3
2830 Female, age 67, right hemisphere 72.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

160.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 160.2
Samples: 181

Max nTPM: 640.3
Min nTPM: 16.7
Std nTPM: 114.7
Median nTPM: 134.6
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 640.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 575.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 546.7
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 500.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 476.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 460.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 437.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 389.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 387.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 349.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 337.6
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 335.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 326.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 310.4
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 309.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 305.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 305.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 305.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 304.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 299.8
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 297.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 292.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 291.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 288.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 287.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 280.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 279.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 277.4
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 276.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 275.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 275.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 271.8
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 261.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 256.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 256.1
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 255.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 248.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 245.2
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 243.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 233.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 231.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 228.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 223.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 223.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 221.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 220.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 219.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 217.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 214.8
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 212.8
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 208.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 205.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 204.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 203.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 203.4
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 202.4
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 197.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 191.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 187.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 187.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 185.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 179.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 178.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 178.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 173.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 173.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 172.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 171.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 170.4
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 167.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 167.1
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 166.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 166.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 160.0
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 159.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 158.0
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 157.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 157.1
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 154.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 154.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 150.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 149.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 144.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 142.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 141.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 141.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 139.1
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 137.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 134.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 134.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 134.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 127.6
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 126.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 124.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 124.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 120.1
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 119.9
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 117.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 117.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 117.5
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 117.0
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 116.8
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 115.8
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 115.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 113.8
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 108.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 108.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 107.4
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 106.4
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 106.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 101.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 101.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 98.7
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 96.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 94.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 93.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 92.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 92.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 91.0
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 89.1
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 88.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 86.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 86.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 86.4
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 85.9
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 84.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 82.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 80.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 79.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 79.3
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 77.7
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 77.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 76.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 75.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 74.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 74.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 69.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 69.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 68.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 67.5
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 67.2
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 66.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 64.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 61.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 60.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 60.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 60.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 59.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 58.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 57.5
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 57.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 54.2
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 54.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 54.1
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 53.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 52.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 52.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 50.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 50.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 50.4
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 48.8
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 44.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 44.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 43.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 41.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 41.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 40.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 38.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 37.6
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 36.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 34.5
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 33.9
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 30.7
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 30.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 29.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 26.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 25.4
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 23.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 23.3
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 17.0
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 16.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

497.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 497.8
FF:10151-102I7 76 years, female 497.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

188.5
Pig sample Sample description nTPM
Amygdala
nTPM: 188.5
Samples: 4

Max nTPM: 249.1
Min nTPM: 146.4
Sample A Female 249.1
Sample B Female 200.5
Sample C Male 158.1
Sample D Male 146.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

532.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 532.9
Samples: 4

Max nTPM: 565.9
Min nTPM: 495.9
Sample A Male 565.9
Sample B Male 537.0
Sample C Female 532.6
Sample D Female 495.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

5.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 5.7
1107 Antisense, RP_Baylor_103157, Mouse strain C57BL/6J (56 days, male) 5.7
1106 Antisense, RP_Baylor_103157, Mouse strain C57BL/6J (56 days, male) 4.7

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