HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:140.5 nTPM
HPA Brain:579.5 nTPM
GTEx:140.5 nTPM
FANTOM5:515.9 Scaled Tags Per Million
Pig:608.6 nTPM
Mouse:711.1 nTPM
Allen mouse:6.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 579.5
Sample id Sample description nTPM
Hippocampus
nTPM: 150.5
1898 Male, age 80, left hemisphere 261.9
2621 Female, age 67, right hemisphere 175.2
1911 Female, age 85, right hemisphere 144.4
1855 Male, age 76, left hemisphere 112.3
2529 Female, age 94, left hemisphere 105.1
2148 Female, age 91, left hemisphere 104.1
Dentate gyrus
nTPM: 155.9
1927 Female, age 91, both hemispheres 204.9
2246 Female, age 85, both hemispheres 169.8
2530 Female, age 94, left hemisphere 169.2
2010 Male, age 76, both hemispheres 145.4
2528 Male, age 74, both hemispheres 131.5
2531 Female, age 67, both hemispheres 114.6
Entorhinal gyrus
nTPM: 352.1
2613 Female, age 94, left hemisphere 453.6
2764 Male, age 80, right hemisphere 429.4
2686 Male, age 75, right hemisphere 398.5
1938 Female, age 85, left hemisphere 374.5
1787 Male, age 76, left hemisphere 301.8
2117 Female, age 91, right hemisphere 154.7
Hippocampus, CA1
nTPM: 206.9
2749 Male, age 80, left hemisphere 333.2
2527 Male, age 74, both hemispheres 240.9
2082 Female, age 91, right hemisphere 188.3
1873 Female, age 85, both hemispheres 155.1
2045 Male, age 76, both hemispheres 116.9
Hippocampus, CA2
nTPM: 253.7
1892 Male, age 76, both hemispheres 359.5
2437 Female, age 94, left hemisphere 323.9
2249 Male, age 74, both hemispheres 238.5
1940 Female, age 85, left hemisphere 231.6
2113 Female, age 91, right hemisphere 214.9
1963 Male, age 80, left hemisphere 153.8
Hippocampus, CA3
nTPM: 203.9
1867 Male, age 76, both hemispheres 302.5
2137 Male, age 80, left hemisphere 222.9
1891 Female, age 85, both hemispheres 209.6
2436 Male, age 74, both hemispheres 199.4
2620 Female, age 94, left hemisphere 144.7
2861 Female, age 67, both hemispheres 144.4
Parahippocampal cortex
nTPM: 426.0
2622 Female, age 67, right hemisphere 602.8
2693 Female, age 94, both hemispheres 522.4
1850 Male, age 80, both hemispheres 495.7
2245 Female, age 91, both hemispheres 472.6
1990 Female, age 91, right hemisphere 457.7
2532 Female, age 72, left hemisphere 393.3
1933 Female, age 85, both hemispheres 386.4
2250 Female, age 67, right hemisphere 359.1
2692 Male, age 74, both hemispheres 310.6
2018 Male, age 76, both hemispheres 259.8
Perirhinal gyrus
nTPM: 579.5
1847 Female, age 91, left hemisphere 665.0
1841 Female, age 85, right hemisphere 653.2
1794 Male, age 80, right hemisphere 583.1
2521 Female, age 94, right hemisphere 582.3
2848 Male, age 76, right hemisphere 413.7
Subiculum
nTPM: 270.8
2438 Female, age 94, left hemisphere 436.7
2619 Male, age 74, both hemispheres 349.3
1977 Female, age 85, both hemispheres 320.1
1901 Male, age 80, both hemispheres 274.5
2042 Male, age 76, both hemispheres 154.0
2729 Female, age 91, right hemisphere 90.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 140.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 140.5
Samples: 255

Max nTPM: 878.3
Min nTPM: 4.7
Std nTPM: 148.8
Median nTPM: 97.0
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 878.3
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 794.0
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 787.1
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 771.1
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 692.0
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 681.8
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 644.3
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 591.8
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 541.2
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 518.3
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 506.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 515.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 515.9
FF:10169-103B7 60 years, female 661.5
FF:10153-102I9 76 years, female 370.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 608.6
Pig sample Sample description nTPM
Subiculum
nTPM: 388.8
Samples: 4

Max nTPM: 577.5
Min nTPM: 287.5
Sample A Female 577.5
Sample B Female 370.4
Sample C Male 319.9
Sample D Male 287.5
Dorsal hippocampus
nTPM: 266.3
Samples: 4

Max nTPM: 551.4
Min nTPM: 98.9
Sample A Female 221.3
Sample B Female 193.6
Sample C Male 551.4
Sample D Male 98.9
Entorhinal cortex
nTPM: 608.6
Samples: 4

Max nTPM: 673.7
Min nTPM: 572.9
Sample A Female 673.7
Sample B Female 590.3
Sample C Male 572.9
Sample D Male 597.6
Ventral hippocampus
nTPM: 269.5
Samples: 4

Max nTPM: 374.7
Min nTPM: 166.1
Sample A Female 374.7
Sample B Female 200.8
Sample C Male 336.3
Sample D Male 166.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 711.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 711.1
Samples: 4

Max nTPM: 787.1
Min nTPM: 653.9
Sample A Male 744.1
Sample B Male 787.1
Sample C Female 653.9
Sample D Female 659.1
Hippocampal formation
nTPM: 467.4
Samples: 4

Max nTPM: 534.4
Min nTPM: 435.7
Sample A Male 534.4
Sample B Male 435.7
Sample C Female 441.7
Sample D Female 457.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 6.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 6.6
1106 Antisense, RP_Baylor_103157, Mouse strain C57BL/6J (56 days, male) 6.6
1107 Antisense, RP_Baylor_103157, Mouse strain C57BL/6J (56 days, male) 3.8

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