MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:73.6 nTPM
HPA Brain:293.8 nTPM
GTEx:73.6 nTPM
FANTOM5:6.7 Scaled Tags Per Million
Pig:592.0 nTPM
Mouse:697.2 nTPM
Allen mouse:2.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 293.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 114.1
2219 Male, age 76, both hemispheres 176.3
2019 Male, age 18, unknown 170.5
1827 Male, age 72, unknown 157.1
2411 Female, age 72, unknown 127.2
2828 Female, age 72, unknown 116.2
1833 Male, age 53, unknown 97.5
1830 Male, age 51, unknown 97.4
1870 Female, age 42, unknown 92.5
2666 Male, age 74, left hemisphere 60.4
2586 Male, age 75, left hemisphere 45.8
Dorsal raphe nucleus
nTPM: 129.7
2047 Male, age 72, unknown 197.9
2750 Male, age 76, both hemispheres 162.8
2298 Female, age 72, unknown 133.6
1828 Male, age 53, unknown 83.8
2016 Female, age 72, unknown 70.5
Inferior colliculus
nTPM: 136.6
1848 Female, age 42, unknown 174.3
2849 Male, age 72, unknown 142.6
2097 Female, age 72, unknown 135.8
1890 Male, age 53, unknown 93.5
Median raphe nucleus
nTPM: 293.8
2220 Male, age 76, midline 293.8
Periaquaductal grey, anterior
nTPM: 159.8
2502 Female, age 75, unknown 244.9
1947 Male, age 18, unknown 121.4
1795 Male, age 51, unknown 113.0
Periaquaductal grey, dorsal
nTPM: 107.3
1840 Male, age 53, unknown 130.9
2464 Female, age 72, unknown 122.1
2850 Male, age 76, both hemispheres 109.1
1831 Male, age 72, unknown 66.9
Periaquaductal grey, lateral
nTPM: 90.9
2140 Male, age 76, both hemispheres 96.2
2272 Male, age 74, both hemispheres 94.0
2053 Male, age 18, unknown 82.4
Pretectal area
nTPM: 161.9
1816 Male, age 51, unknown 234.7
1944 Female, age 72, unknown 232.5
2007 Male, age 72, unknown 229.8
1817 Female, age 42, unknown 217.4
1815 Male, age 53, unknown 188.8
2667 Female, age 75, unknown 170.1
2316 Male, age 76, right hemisphere 134.2
2825 Male, age 18, unknown 99.3
2273 Male, age 74, both hemispheres 93.9
2224 Female, age 72, unknown 91.4
2407 Male, age 75, both hemispheres 88.7
Red nucleus
nTPM: 127.1
1821 Female, age 72, unknown 184.4
2785 Male, age 18, unknown 167.7
1954 Female, age 42, unknown 151.9
2588 Male, age 74, left hemisphere 137.6
1865 Male, age 51, unknown 125.3
2823 Male, age 76, right hemisphere 120.0
2503 Female, age 72, unknown 114.9
1904 Male, age 53, unknown 112.8
2227 Male, age 72, unknown 112.7
2769 Male, age 72, unknown 111.3
2584 Male, age 75, left hemisphere 108.3
2725 Female, age 75, unknown 77.9
Substantia nigra
nTPM: 130.1
2665 Male, age 74, both hemispheres 291.0
1941 Male, age 53, unknown 235.6
1889 Female, age 72, unknown 168.6
1851 Male, age 51, unknown 105.6
2409 Female, age 72, unknown 101.0
1916 Female, age 42, unknown 93.1
2699 Male, age 18, unknown 89.4
2590 Female, age 75, unknown 83.6
2241 Male, age 72, unknown 71.7
2583 Male, age 75, right hemisphere 60.9
Superior colliculus
nTPM: 134.7
1895 Male, age 76, right hemisphere 225.7
2087 Female, age 72, unknown 173.2
1796 Male, age 53, unknown 166.1
2261 Male, age 18, unknown 151.9
2668 Female, age 75, unknown 148.3
1839 Male, age 51, unknown 141.1
1913 Female, age 42, unknown 99.3
1995 Male, age 72, unknown 95.5
2664 Male, age 75, both hemispheres 77.0
2587 Male, age 74, left hemisphere 68.4
Ventral tegmental area
nTPM: 131.5
2218 Male, age 76, both hemispheres 224.0
2410 Female, age 72, unknown 152.4
2223 Female, age 72, unknown 125.1
1942 Male, age 51, unknown 108.8
1915 Female, age 42, unknown 108.4
2021 Male, age 53, unknown 70.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 73.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 73.6
Samples: 183

Max nTPM: 811.3
Min nTPM: 1.4
Std nTPM: 109.8
Median nTPM: 39.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 811.3
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 651.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 651.6
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 465.4
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 399.9
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 279.9
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 276.7
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 245.4
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 234.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 230.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 229.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 6.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 6.7
FF:10158-103A5 76 years, female 6.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 592.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 331.4
Samples: 4

Max nTPM: 584.7
Min nTPM: 70.6
Sample A Female 435.1
Sample B Female 235.1
Sample C Male 584.7
Sample D Male 70.6
Midbrain
nTPM: 467.8
Samples: 4

Max nTPM: 921.1
Min nTPM: 84.5
Sample A Female 84.5
Sample B Female 238.3
Sample C Male 921.1
Sample D Male 627.4
Periaqueductal gray
nTPM: 227.8
Samples: 3

Max nTPM: 279.3
Min nTPM: 199.6
Sample B Female 204.4
Sample C Male 279.3
Sample D Male 199.6
Superior colliculi
nTPM: 592.1
Samples: 4

Max nTPM: 1121.0
Min nTPM: 320.4
Sample A Female 457.4
Sample B Female 320.4
Sample C Male 1121.0
Sample D Male 469.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 697.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 697.2
Samples: 4

Max nTPM: 723.2
Min nTPM: 667.3
Sample A Male 667.3
Sample B Male 722.5
Sample C Female 723.2
Sample D Female 675.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.8
1106 Antisense, RP_Baylor_103157, Mouse strain C57BL/6J (56 days, male) 5.5
1107 Antisense, RP_Baylor_103157, Mouse strain C57BL/6J (56 days, male) 3.9
1108 Sense, RPS_Baylor_37074, Mouse strain C57BL/6J (56 days, male) 0.0

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