MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:7.5 nTPM
HPA Brain:26.5 nTPM
GTEx:7.5 nTPM
FANTOM5:13.7 Scaled Tags Per Million
Pig:6.6 nTPM
Mouse:15.8 nTPM
Allen mouse:0.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 26.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 22.9
2019 Male, age 18, unknown 26.6
1827 Male, age 72, unknown 24.1
2219 Male, age 76, both hemispheres 24.1
2586 Male, age 75, left hemisphere 23.8
2411 Female, age 72, unknown 23.5
1830 Male, age 51, unknown 23.0
2828 Female, age 72, unknown 22.2
1833 Male, age 53, unknown 21.6
1870 Female, age 42, unknown 20.3
2666 Male, age 74, left hemisphere 19.5
Dorsal raphe nucleus
nTPM: 25.1
2298 Female, age 72, unknown 27.8
2016 Female, age 72, unknown 27.7
1828 Male, age 53, unknown 24.5
2750 Male, age 76, both hemispheres 24.1
2047 Male, age 72, unknown 21.4
Inferior colliculus
nTPM: 21.7
2097 Female, age 72, unknown 22.7
1890 Male, age 53, unknown 22.1
1848 Female, age 42, unknown 21.1
2849 Male, age 72, unknown 21.0
Median raphe nucleus
nTPM: 22.6
2220 Male, age 76, midline 22.6
Periaquaductal grey, anterior
nTPM: 25.0
2502 Female, age 75, unknown 26.4
1795 Male, age 51, unknown 25.4
1947 Male, age 18, unknown 23.1
Periaquaductal grey, dorsal
nTPM: 26.5
2850 Male, age 76, both hemispheres 28.6
1840 Male, age 53, unknown 26.5
2464 Female, age 72, unknown 26.3
1831 Male, age 72, unknown 24.8
Periaquaductal grey, lateral
nTPM: 26.1
2272 Male, age 74, both hemispheres 30.9
2140 Male, age 76, both hemispheres 24.6
2053 Male, age 18, unknown 22.8
Pretectal area
nTPM: 24.5
2273 Male, age 74, both hemispheres 30.1
1816 Male, age 51, unknown 26.9
2007 Male, age 72, unknown 25.7
1944 Female, age 72, unknown 25.2
2407 Male, age 75, both hemispheres 24.3
1815 Male, age 53, unknown 23.6
2224 Female, age 72, unknown 23.5
2667 Female, age 75, unknown 23.4
2316 Male, age 76, right hemisphere 23.1
1817 Female, age 42, unknown 22.7
2825 Male, age 18, unknown 21.1
Red nucleus
nTPM: 22.5
1904 Male, age 53, unknown 25.1
2769 Male, age 72, unknown 24.2
2785 Male, age 18, unknown 24.2
2227 Male, age 72, unknown 23.2
2584 Male, age 75, left hemisphere 23.1
2725 Female, age 75, unknown 22.5
2503 Female, age 72, unknown 22.4
1954 Female, age 42, unknown 22.3
1821 Female, age 72, unknown 21.7
2823 Male, age 76, right hemisphere 20.9
2588 Male, age 74, left hemisphere 20.5
1865 Male, age 51, unknown 19.7
Substantia nigra
nTPM: 23.4
1916 Female, age 42, unknown 25.7
1851 Male, age 51, unknown 25.0
2409 Female, age 72, unknown 24.6
2583 Male, age 75, right hemisphere 24.2
2699 Male, age 18, unknown 22.9
1889 Female, age 72, unknown 22.8
1941 Male, age 53, unknown 22.8
2590 Female, age 75, unknown 22.7
2241 Male, age 72, unknown 22.1
2665 Male, age 74, both hemispheres 21.7
Superior colliculus
nTPM: 23.1
2261 Male, age 18, unknown 26.5
1995 Male, age 72, unknown 25.4
2664 Male, age 75, both hemispheres 25.2
2087 Female, age 72, unknown 24.2
2668 Female, age 75, unknown 23.3
1796 Male, age 53, unknown 22.7
1913 Female, age 42, unknown 21.7
2587 Male, age 74, left hemisphere 21.6
1839 Male, age 51, unknown 21.0
1895 Male, age 76, right hemisphere 19.8
Ventral tegmental area
nTPM: 24.4
2410 Female, age 72, unknown 27.3
1942 Male, age 51, unknown 25.1
2021 Male, age 53, unknown 24.8
2223 Female, age 72, unknown 23.7
2218 Male, age 76, both hemispheres 23.4
1915 Female, age 42, unknown 21.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 7.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 7.5
Samples: 183

Max nTPM: 16.4
Min nTPM: 3.4
Std nTPM: 2.0
Median nTPM: 7.4
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 16.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 14.7
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 14.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 13.5
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 12.9
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 11.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 11.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 11.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 11.0
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 10.7
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 10.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 13.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 13.7
FF:10158-103A5 76 years, female 13.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 6.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 4.5
Samples: 4

Max nTPM: 5.6
Min nTPM: 2.9
Sample A Female 5.5
Sample B Female 4.1
Sample C Male 5.6
Sample D Male 2.9
Midbrain
nTPM: 6.1
Samples: 4

Max nTPM: 8.6
Min nTPM: 4.2
Sample A Female 4.2
Sample B Female 5.2
Sample C Male 6.5
Sample D Male 8.6
Periaqueductal gray
nTPM: 6.5
Samples: 3

Max nTPM: 7.8
Min nTPM: 5.4
Sample B Female 5.4
Sample C Male 6.4
Sample D Male 7.8
Superior colliculi
nTPM: 6.2
Samples: 4

Max nTPM: 6.7
Min nTPM: 5.7
Sample A Female 6.7
Sample B Female 6.4
Sample C Male 5.7
Sample D Male 6.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 15.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 15.8
Samples: 4

Max nTPM: 16.4
Min nTPM: 14.7
Sample A Male 16.4
Sample B Male 16.4
Sample C Female 15.7
Sample D Female 14.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
69116721 Antisense, RP_050321_01_A07, Mouse strain C57BL/6J (56 days, male) 0.5

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