A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.4
nTPM
Monaco:
31.7
nTPM
Schmiedel:
54.9
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.4
HPA sample
nTPM
NK-cell nTPM: 2.4
Samples: 6
Max nTPM: 6.0
Min nTPM: 0.7
P10809_1013
3.5
P10809_1033
0.7
P10809_1052
2.2
P10809_1071
0.8
P10809_1093
1.0
P10809_1103
6.0
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
31.7
Monaco sample
nTPM
NK-cell nTPM: 31.7
Samples: 4
Max nTPM: 42.6
Min nTPM: 23.9
RHH5316_R3683
23.9
RHH5224_R3596
26.4
RHH5253_R3625
33.8
RHH5282_R3654
42.6
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
54.9
Schmiedel sample id
TPM
NK-cell TPM: 54.9
Samples: 90
Max TPM: 67.2
Min TPM: 34.2
NK_1
67.2
NK_2
65.3
NK_3
64.7
NK_4
64.6
NK_5
63.9
NK_6
63.7
NK_7
63.5
NK_8
62.8
NK_9
62.7
NK_10
62.3
NK_11
62.1
NK_12
61.6
NK_13
61.6
NK_14
60.7
NK_15
60.3
NK_16
59.9
NK_17
59.9
NK_18
59.4
NK_19
59.4
NK_20
59.3
NK_21
59.2
NK_22
59.1
NK_23
58.7
NK_24
58.6
NK_25
58.2
NK_26
58.1
NK_27
57.9
NK_28
57.8
NK_29
57.3
NK_30
57.2
NK_31
57.2
NK_32
56.8
NK_33
56.7
NK_34
56.6
NK_35
56.1
NK_36
55.5
NK_37
55.4
NK_38
55.1
NK_39
55.1
NK_40
54.8
NK_41
54.8
NK_42
54.7
NK_43
54.5
NK_44
54.5
NK_45
54.4
NK_46
54.1
NK_47
54.1
NK_48
54.0
NK_49
54.0
NK_50
53.8
NK_51
53.4
NK_52
53.4
NK_53
53.4
NK_54
53.3
NK_55
53.1
NK_56
53.1
NK_57
53.0
NK_58
53.0
NK_59
53.0
NK_60
52.9
NK_61
52.6
NK_62
52.5
NK_63
52.4
NK_64
52.3
NK_65
52.2
NK_66
52.1
NK_67
51.9
NK_68
51.9
NK_69
51.8
NK_70
51.6
NK_71
51.3
NK_72
51.2
NK_73
51.0
NK_74
50.9
NK_75
50.7
NK_76
50.4
NK_77
50.4
NK_78
50.3
NK_79
49.7
NK_80
49.7
NK_81
49.6
NK_82
49.3
NK_83
48.9
NK_84
48.7
NK_85
48.7
NK_86
48.6
NK_87
46.3
NK_88
42.8
NK_89
39.9
NK_90
34.2
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