A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4.3
nTPM
Monaco:
22.1
nTPM
Schmiedel:
32.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4.3
HPA sample
nTPM
Classical monocyte nTPM: 1.6
Samples: 6
Max nTPM: 2.0
Min nTPM: 0.9
P10809_1003
2.0
P10809_1020
1.5
P10809_1039
0.9
P10809_1058
2.0
P10809_1080
1.8
P10809_1107
1.3
Intermediate monocyte nTPM: 0.7
Samples: 6
Max nTPM: 1.8
Min nTPM: 0.2
P10809_1004
1.1
P10809_1023
0.4
P10809_1042
0.3
P10809_1061
0.2
P10809_1081
1.8
P10809_1108
0.6
Non-classical monocyte nTPM: 4.3
Samples: 5
Max nTPM: 13.7
Min nTPM: 1.3
P10809_1005
1.4
P10809_1053
1.6
P10809_1072
13.7
P10809_1082
3.3
P10809_1109
1.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
22.1
Monaco sample
nTPM
Classical monocyte nTPM: 15.3
Samples: 4
Max nTPM: 21.0
Min nTPM: 10.0
RHH5313_R3680
14.3
RHH5221_R3593
10.0
RHH5250_R3622
15.9
RHH5279_R3651
21.0
Intermediate monocyte nTPM: 15.0
Samples: 4
Max nTPM: 22.7
Min nTPM: 10.7
RHH5314_R3681
15.1
RHH5222_R3594
11.3
RHH5251_R3623
10.7
RHH5280_R3652
22.7
Non-classical monocyte nTPM: 22.1
Samples: 4
Max nTPM: 28.4
Min nTPM: 17.3
RHH5315_R3682
20.4
RHH5223_R3595
17.3
RHH5252_R3624
22.4
RHH5281_R3653
28.4
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
32.7
Schmiedel sample id
TPM
Classical monocyte TPM: 23.6
Samples: 91
Max TPM: 29.6
Min TPM: 15.8
MONOCYTES_1
29.6
MONOCYTES_2
28.8
MONOCYTES_3
28.4
MONOCYTES_4
28.0
MONOCYTES_5
27.7
MONOCYTES_6
27.6
MONOCYTES_7
27.6
MONOCYTES_8
27.6
MONOCYTES_9
27.5
MONOCYTES_10
27.3
MONOCYTES_11
26.8
MONOCYTES_12
26.8
MONOCYTES_13
26.8
MONOCYTES_14
26.6
MONOCYTES_15
26.4
MONOCYTES_16
26.4
MONOCYTES_17
26.3
MONOCYTES_18
26.3
MONOCYTES_19
26.0
MONOCYTES_20
25.8
MONOCYTES_21
25.7
MONOCYTES_22
25.4
MONOCYTES_23
25.4
MONOCYTES_24
25.4
MONOCYTES_25
25.3
MONOCYTES_26
25.1
MONOCYTES_27
25.1
MONOCYTES_28
25.0
MONOCYTES_29
25.0
MONOCYTES_30
24.8
MONOCYTES_31
24.7
MONOCYTES_32
24.6
MONOCYTES_33
24.5
MONOCYTES_34
24.5
MONOCYTES_35
24.4
MONOCYTES_36
24.3
MONOCYTES_37
24.2
MONOCYTES_38
24.2
MONOCYTES_39
24.1
MONOCYTES_40
24.1
MONOCYTES_41
24.1
MONOCYTES_42
24.0
MONOCYTES_43
23.9
MONOCYTES_44
23.8
MONOCYTES_45
23.8
MONOCYTES_46
23.7
MONOCYTES_47
23.6
MONOCYTES_48
23.6
MONOCYTES_49
23.6
MONOCYTES_50
23.5
MONOCYTES_51
23.5
MONOCYTES_52
23.4
MONOCYTES_53
23.4
MONOCYTES_54
23.3
MONOCYTES_55
23.3
MONOCYTES_56
23.0
MONOCYTES_57
22.9
MONOCYTES_58
22.9
MONOCYTES_59
22.8
MONOCYTES_60
22.7
MONOCYTES_61
22.5
MONOCYTES_62
22.4
MONOCYTES_63
22.3
MONOCYTES_64
22.3
MONOCYTES_65
22.3
MONOCYTES_66
22.1
MONOCYTES_67
22.1
MONOCYTES_68
22.0
MONOCYTES_69
22.0
MONOCYTES_70
22.0
MONOCYTES_71
21.9
MONOCYTES_72
21.9
MONOCYTES_73
21.8
MONOCYTES_74
21.7
MONOCYTES_75
21.5
MONOCYTES_76
21.3
MONOCYTES_77
21.0
MONOCYTES_78
20.6
MONOCYTES_79
20.4
MONOCYTES_80
20.3
MONOCYTES_81
20.2
MONOCYTES_82
20.0
MONOCYTES_83
19.6
MONOCYTES_84
19.4
MONOCYTES_85
19.0
MONOCYTES_86
18.7
MONOCYTES_87
18.6
MONOCYTES_88
18.4
MONOCYTES_89
18.2
MONOCYTES_90
17.5
MONOCYTES_91
15.8
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Non-classical monocyte TPM: 32.7
Samples: 90
Max TPM: 42.9
Min TPM: 24.1
M2_1
42.9
M2_2
39.7
M2_3
39.4
M2_4
38.3
M2_5
38.2
M2_6
37.1
M2_7
36.8
M2_8
36.5
M2_9
36.5
M2_10
36.5
M2_11
36.4
M2_12
36.3
M2_13
36.3
M2_14
36.2
M2_15
35.8
M2_16
35.8
M2_17
35.8
M2_18
35.6
M2_19
35.6
M2_20
35.3
M2_21
35.3
M2_22
35.0
M2_23
34.9
M2_24
34.7
M2_25
34.6
M2_26
34.5
M2_27
34.5
M2_28
34.5
M2_29
34.4
M2_30
34.4
M2_31
34.2
M2_32
34.1
M2_33
34.1
M2_34
34.1
M2_35
34.0
M2_36
34.0
M2_37
34.0
M2_38
33.9
M2_39
33.7
M2_40
33.5
M2_41
33.4
M2_42
33.3
M2_43
33.1
M2_44
33.0
M2_45
33.0
M2_46
32.8
M2_47
32.7
M2_48
32.6
M2_49
31.9
M2_50
31.6
M2_51
31.5
M2_52
31.5
M2_53
31.5
M2_54
31.5
M2_55
31.5
M2_56
31.2
M2_57
31.2
M2_58
31.1
M2_59
31.0
M2_60
31.0
M2_61
31.0
M2_62
30.9
M2_63
30.8
M2_64
30.7
M2_65
30.7
M2_66
30.5
M2_67
30.5
M2_68
30.3
M2_69
30.1
M2_70
30.0
M2_71
30.0
M2_72
29.8
M2_73
29.6
M2_74
29.6
M2_75
29.5
M2_76
29.5
M2_77
29.5
M2_78
29.4
M2_79
29.4
M2_80
29.2
M2_81
28.3
M2_82
28.1
M2_83
27.9
M2_84
27.8
M2_85
27.5
M2_86
27.0
M2_87
26.6
M2_88
26.3
M2_89
26.2
M2_90
24.1
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