A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
30.7
nTPM
Monaco:
34.4
nTPM
Schmiedel:
30.6
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
30.7
HPA sample
nTPM
NK-cell nTPM: 30.7
Samples: 6
Max nTPM: 56.8
Min nTPM: 11.2
P10809_1013
11.2
P10809_1033
22.4
P10809_1052
37.3
P10809_1071
23.6
P10809_1093
56.8
P10809_1103
32.7
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
34.4
Monaco sample
nTPM
NK-cell nTPM: 34.4
Samples: 4
Max nTPM: 44.7
Min nTPM: 22.2
RHH5316_R3683
44.7
RHH5224_R3596
33.3
RHH5253_R3625
22.2
RHH5282_R3654
37.3
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
30.6
Schmiedel sample id
TPM
NK-cell TPM: 30.6
Samples: 90
Max TPM: 46.1
Min TPM: 13.9
NK_1
46.1
NK_2
44.6
NK_3
43.7
NK_4
40.0
NK_5
39.8
NK_6
39.6
NK_7
39.4
NK_8
39.3
NK_9
39.3
NK_10
39.2
NK_11
39.1
NK_12
38.1
NK_13
37.6
NK_14
37.5
NK_15
37.2
NK_16
37.1
NK_17
36.7
NK_18
36.5
NK_19
36.5
NK_20
35.7
NK_21
35.7
NK_22
35.0
NK_23
34.9
NK_24
34.8
NK_25
34.4
NK_26
34.3
NK_27
34.2
NK_28
33.6
NK_29
33.6
NK_30
33.5
NK_31
33.5
NK_32
33.3
NK_33
32.9
NK_34
32.7
NK_35
32.7
NK_36
32.4
NK_37
32.1
NK_38
32.0
NK_39
31.7
NK_40
31.7
NK_41
31.7
NK_42
31.5
NK_43
31.3
NK_44
31.2
NK_45
30.9
NK_46
30.8
NK_47
30.7
NK_48
30.6
NK_49
30.5
NK_50
30.0
NK_51
30.0
NK_52
30.0
NK_53
29.8
NK_54
29.8
NK_55
29.3
NK_56
29.1
NK_57
29.0
NK_58
29.0
NK_59
28.7
NK_60
28.5
NK_61
28.3
NK_62
27.9
NK_63
27.7
NK_64
27.5
NK_65
27.0
NK_66
26.8
NK_67
26.3
NK_68
26.1
NK_69
26.0
NK_70
25.6
NK_71
25.4
NK_72
25.0
NK_73
25.0
NK_74
24.8
NK_75
24.2
NK_76
23.9
NK_77
23.6
NK_78
23.5
NK_79
23.5
NK_80
22.7
NK_81
22.0
NK_82
21.8
NK_83
21.1
NK_84
21.0
NK_85
19.7
NK_86
19.5
NK_87
19.2
NK_88
17.0
NK_89
15.3
NK_90
13.9
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