A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
25.3
nTPM
Monaco:
38.0
nTPM
Schmiedel:
19.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
25.3
HPA sample
nTPM
Classical monocyte nTPM: 21.5
Samples: 6
Max nTPM: 33.2
Min nTPM: 12.1
P10809_1003
12.1
P10809_1020
26.0
P10809_1039
33.2
P10809_1058
15.9
P10809_1080
19.7
P10809_1107
22.1
Intermediate monocyte nTPM: 21.3
Samples: 6
Max nTPM: 30.3
Min nTPM: 9.8
P10809_1004
18.0
P10809_1023
25.2
P10809_1042
25.4
P10809_1061
9.8
P10809_1081
19.1
P10809_1108
30.3
Non-classical monocyte nTPM: 25.3
Samples: 5
Max nTPM: 39.0
Min nTPM: 14.6
P10809_1005
14.6
P10809_1053
39.0
P10809_1072
20.1
P10809_1082
18.1
P10809_1109
34.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
38.0
Monaco sample
nTPM
Classical monocyte nTPM: 29.2
Samples: 4
Max nTPM: 36.3
Min nTPM: 17.1
RHH5313_R3680
31.7
RHH5221_R3593
17.1
RHH5250_R3622
31.6
RHH5279_R3651
36.3
Intermediate monocyte nTPM: 33.9
Samples: 4
Max nTPM: 50.3
Min nTPM: 12.6
RHH5314_R3681
44.5
RHH5222_R3594
12.6
RHH5251_R3623
28.1
RHH5280_R3652
50.3
Non-classical monocyte nTPM: 38.1
Samples: 4
Max nTPM: 52.8
Min nTPM: 17.1
RHH5315_R3682
45.5
RHH5223_R3595
17.1
RHH5252_R3624
36.8
RHH5281_R3653
52.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
19.1
Schmiedel sample id
TPM
Classical monocyte TPM: 10.1
Samples: 91
Max TPM: 15.7
Min TPM: 5.5
MONOCYTES_1
15.7
MONOCYTES_2
14.5
MONOCYTES_3
14.0
MONOCYTES_4
13.7
MONOCYTES_5
13.7
MONOCYTES_6
13.5
MONOCYTES_7
13.1
MONOCYTES_8
13.1
MONOCYTES_9
12.8
MONOCYTES_10
12.6
MONOCYTES_11
12.6
MONOCYTES_12
12.5
MONOCYTES_13
12.5
MONOCYTES_14
12.3
MONOCYTES_15
12.3
MONOCYTES_16
12.1
MONOCYTES_17
11.9
MONOCYTES_18
11.9
MONOCYTES_19
11.8
MONOCYTES_20
11.8
MONOCYTES_21
11.7
MONOCYTES_22
11.7
MONOCYTES_23
11.5
MONOCYTES_24
11.4
MONOCYTES_25
11.3
MONOCYTES_26
11.3
MONOCYTES_27
11.2
MONOCYTES_28
11.1
MONOCYTES_29
11.1
MONOCYTES_30
11.1
MONOCYTES_31
11.0
MONOCYTES_32
11.0
MONOCYTES_33
10.9
MONOCYTES_34
10.8
MONOCYTES_35
10.7
MONOCYTES_36
10.7
MONOCYTES_37
10.7
MONOCYTES_38
10.7
MONOCYTES_39
10.7
MONOCYTES_40
10.6
MONOCYTES_41
10.6
MONOCYTES_42
10.4
MONOCYTES_43
10.4
MONOCYTES_44
10.3
MONOCYTES_45
10.2
MONOCYTES_46
10.1
MONOCYTES_47
10.0
MONOCYTES_48
10.0
MONOCYTES_49
10.0
MONOCYTES_50
10.0
MONOCYTES_51
9.9
MONOCYTES_52
9.6
MONOCYTES_53
9.6
MONOCYTES_54
9.5
MONOCYTES_55
9.5
MONOCYTES_56
9.4
MONOCYTES_57
9.4
MONOCYTES_58
9.3
MONOCYTES_59
9.3
MONOCYTES_60
9.3
MONOCYTES_61
9.2
MONOCYTES_62
9.2
MONOCYTES_63
9.1
MONOCYTES_64
9.1
MONOCYTES_65
9.1
MONOCYTES_66
8.7
MONOCYTES_67
8.7
MONOCYTES_68
8.7
MONOCYTES_69
8.6
MONOCYTES_70
8.6
MONOCYTES_71
8.5
MONOCYTES_72
8.5
MONOCYTES_73
8.4
MONOCYTES_74
8.0
MONOCYTES_75
8.0
MONOCYTES_76
7.9
MONOCYTES_77
7.9
MONOCYTES_78
7.8
MONOCYTES_79
7.8
MONOCYTES_80
7.7
MONOCYTES_81
7.6
MONOCYTES_82
7.4
MONOCYTES_83
7.3
MONOCYTES_84
6.9
MONOCYTES_85
6.9
MONOCYTES_86
6.8
MONOCYTES_87
6.4
MONOCYTES_88
6.4
MONOCYTES_89
6.1
MONOCYTES_90
5.8
MONOCYTES_91
5.5
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Non-classical monocyte TPM: 19.1
Samples: 90
Max TPM: 27.6
Min TPM: 7.3
M2_1
27.6
M2_2
27.3
M2_3
27.3
M2_4
25.3
M2_5
25.2
M2_6
24.4
M2_7
24.3
M2_8
24.2
M2_9
24.1
M2_10
24.0
M2_11
23.9
M2_12
23.8
M2_13
23.8
M2_14
23.7
M2_15
23.5
M2_16
23.5
M2_17
23.3
M2_18
23.0
M2_19
22.7
M2_20
22.5
M2_21
22.5
M2_22
22.4
M2_23
22.3
M2_24
22.0
M2_25
21.9
M2_26
21.8
M2_27
21.5
M2_28
21.5
M2_29
21.3
M2_30
21.3
M2_31
21.1
M2_32
21.1
M2_33
20.9
M2_34
20.8
M2_35
20.6
M2_36
20.6
M2_37
20.5
M2_38
20.5
M2_39
20.5
M2_40
20.4
M2_41
20.2
M2_42
20.1
M2_43
20.1
M2_44
19.6
M2_45
19.5
M2_46
19.3
M2_47
19.1
M2_48
18.9
M2_49
18.6
M2_50
18.6
M2_51
18.4
M2_52
18.4
M2_53
18.2
M2_54
18.1
M2_55
18.1
M2_56
17.9
M2_57
17.8
M2_58
17.7
M2_59
17.6
M2_60
17.5
M2_61
17.5
M2_62
17.4
M2_63
17.2
M2_64
17.0
M2_65
16.5
M2_66
16.3
M2_67
16.3
M2_68
16.1
M2_69
16.1
M2_70
15.9
M2_71
15.9
M2_72
15.6
M2_73
15.3
M2_74
15.1
M2_75
15.1
M2_76
14.9
M2_77
14.8
M2_78
14.6
M2_79
14.5
M2_80
13.7
M2_81
13.5
M2_82
13.3
M2_83
13.1
M2_84
12.3
M2_85
11.8
M2_86
11.7
M2_87
11.7
M2_88
11.5
M2_89
11.2
M2_90
7.3
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