A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
16.0
nTPM
Monaco:
53.2
nTPM
Schmiedel:
58.4
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
16.0
HPA sample
nTPM
NK-cell nTPM: 16.0
Samples: 6
Max nTPM: 19.0
Min nTPM: 10.7
P10809_1013
18.4
P10809_1033
17.5
P10809_1052
19.0
P10809_1071
10.7
P10809_1093
16.7
P10809_1103
13.6
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
53.2
Monaco sample
nTPM
NK-cell nTPM: 53.2
Samples: 4
Max nTPM: 66.5
Min nTPM: 45.5
RHH5316_R3683
54.1
RHH5224_R3596
46.5
RHH5253_R3625
66.5
RHH5282_R3654
45.5
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
58.4
Schmiedel sample id
TPM
NK-cell TPM: 58.4
Samples: 90
Max TPM: 89.0
Min TPM: 34.5
NK_1
89.0
NK_2
88.1
NK_3
84.1
NK_4
79.0
NK_5
77.1
NK_6
75.7
NK_7
74.6
NK_8
74.3
NK_9
74.1
NK_10
74.0
NK_11
73.6
NK_12
73.1
NK_13
72.7
NK_14
72.6
NK_15
70.9
NK_16
70.5
NK_17
69.7
NK_18
67.3
NK_19
66.6
NK_20
65.5
NK_21
64.8
NK_22
64.7
NK_23
64.7
NK_24
64.4
NK_25
63.9
NK_26
63.7
NK_27
63.0
NK_28
62.4
NK_29
62.2
NK_30
62.1
NK_31
61.8
NK_32
61.1
NK_33
60.8
NK_34
60.7
NK_35
60.5
NK_36
60.5
NK_37
60.3
NK_38
60.2
NK_39
59.9
NK_40
59.8
NK_41
59.6
NK_42
59.6
NK_43
59.0
NK_44
58.9
NK_45
58.8
NK_46
58.4
NK_47
58.4
NK_48
58.3
NK_49
57.7
NK_50
57.6
NK_51
56.7
NK_52
56.5
NK_53
56.3
NK_54
54.5
NK_55
54.3
NK_56
53.9
NK_57
53.9
NK_58
53.8
NK_59
53.6
NK_60
52.6
NK_61
52.6
NK_62
52.2
NK_63
51.9
NK_64
51.5
NK_65
51.0
NK_66
50.3
NK_67
49.3
NK_68
49.2
NK_69
49.0
NK_70
48.8
NK_71
48.6
NK_72
48.3
NK_73
48.1
NK_74
47.6
NK_75
47.3
NK_76
47.2
NK_77
47.1
NK_78
46.4
NK_79
45.7
NK_80
45.2
NK_81
43.8
NK_82
43.4
NK_83
43.2
NK_84
42.1
NK_85
41.8
NK_86
41.7
NK_87
41.2
NK_88
40.2
NK_89
40.1
NK_90
34.5
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