A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
16.7
nTPM
Monaco:
57.8
nTPM
Schmiedel:
47.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
16.7
HPA sample
nTPM
Classical monocyte nTPM: 13.3
Samples: 6
Max nTPM: 15.6
Min nTPM: 11.1
P10809_1003
13.1
P10809_1020
15.6
P10809_1039
15.0
P10809_1058
13.1
P10809_1080
12.0
P10809_1107
11.1
Intermediate monocyte nTPM: 16.7
Samples: 6
Max nTPM: 25.4
Min nTPM: 13.3
P10809_1004
17.3
P10809_1023
15.9
P10809_1042
13.7
P10809_1061
25.4
P10809_1081
13.3
P10809_1108
14.5
Non-classical monocyte nTPM: 13.3
Samples: 5
Max nTPM: 17.5
Min nTPM: 8.9
P10809_1005
14.1
P10809_1053
17.5
P10809_1072
8.9
P10809_1082
15.0
P10809_1109
11.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
57.8
Monaco sample
nTPM
Classical monocyte nTPM: 44.9
Samples: 4
Max nTPM: 49.5
Min nTPM: 37.6
RHH5313_R3680
49.5
RHH5221_R3593
37.6
RHH5250_R3622
43.8
RHH5279_R3651
48.9
Intermediate monocyte nTPM: 54.8
Samples: 4
Max nTPM: 60.8
Min nTPM: 48.7
RHH5314_R3681
50.3
RHH5222_R3594
60.8
RHH5251_R3623
59.4
RHH5280_R3652
48.7
Non-classical monocyte nTPM: 57.8
Samples: 4
Max nTPM: 75.1
Min nTPM: 49.4
RHH5315_R3682
53.7
RHH5223_R3595
75.1
RHH5252_R3624
49.4
RHH5281_R3653
52.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
47.2
Schmiedel sample id
TPM
Classical monocyte TPM: 28.3
Samples: 91
Max TPM: 42.0
Min TPM: 16.0
MONOCYTES_1
42.0
MONOCYTES_2
40.0
MONOCYTES_3
39.5
MONOCYTES_4
39.1
MONOCYTES_5
36.6
MONOCYTES_6
36.4
MONOCYTES_7
35.5
MONOCYTES_8
35.0
MONOCYTES_9
34.7
MONOCYTES_10
34.6
MONOCYTES_11
33.8
MONOCYTES_12
33.7
MONOCYTES_13
33.7
MONOCYTES_14
33.6
MONOCYTES_15
33.5
MONOCYTES_16
33.5
MONOCYTES_17
33.0
MONOCYTES_18
32.8
MONOCYTES_19
32.7
MONOCYTES_20
32.6
MONOCYTES_21
32.6
MONOCYTES_22
32.5
MONOCYTES_23
32.4
MONOCYTES_24
32.2
MONOCYTES_25
32.2
MONOCYTES_26
31.6
MONOCYTES_27
31.1
MONOCYTES_28
30.7
MONOCYTES_29
30.6
MONOCYTES_30
30.0
MONOCYTES_31
29.9
MONOCYTES_32
29.9
MONOCYTES_33
29.6
MONOCYTES_34
29.6
MONOCYTES_35
29.5
MONOCYTES_36
29.4
MONOCYTES_37
29.3
MONOCYTES_38
29.2
MONOCYTES_39
29.2
MONOCYTES_40
29.0
MONOCYTES_41
28.9
MONOCYTES_42
28.6
MONOCYTES_43
28.4
MONOCYTES_44
28.1
MONOCYTES_45
27.6
MONOCYTES_46
27.5
MONOCYTES_47
27.5
MONOCYTES_48
27.4
MONOCYTES_49
27.3
MONOCYTES_50
27.2
MONOCYTES_51
27.0
MONOCYTES_52
26.8
MONOCYTES_53
26.8
MONOCYTES_54
26.8
MONOCYTES_55
26.7
MONOCYTES_56
26.6
MONOCYTES_57
26.2
MONOCYTES_58
26.1
MONOCYTES_59
25.9
MONOCYTES_60
25.7
MONOCYTES_61
25.6
MONOCYTES_62
25.5
MONOCYTES_63
25.5
MONOCYTES_64
25.4
MONOCYTES_65
25.1
MONOCYTES_66
25.0
MONOCYTES_67
24.8
MONOCYTES_68
24.7
MONOCYTES_69
24.5
MONOCYTES_70
24.5
MONOCYTES_71
24.0
MONOCYTES_72
24.0
MONOCYTES_73
23.8
MONOCYTES_74
23.7
MONOCYTES_75
23.6
MONOCYTES_76
23.3
MONOCYTES_77
23.1
MONOCYTES_78
23.1
MONOCYTES_79
22.5
MONOCYTES_80
22.5
MONOCYTES_81
22.5
MONOCYTES_82
22.3
MONOCYTES_83
22.1
MONOCYTES_84
21.9
MONOCYTES_85
21.9
MONOCYTES_86
21.1
MONOCYTES_87
21.0
MONOCYTES_88
20.6
MONOCYTES_89
20.0
MONOCYTES_90
19.1
MONOCYTES_91
16.0
Show allShow less
Non-classical monocyte TPM: 47.2
Samples: 90
Max TPM: 71.5
Min TPM: 34.5
M2_1
71.5
M2_2
69.7
M2_3
69.2
M2_4
66.9
M2_5
66.1
M2_6
65.8
M2_7
64.5
M2_8
62.9
M2_9
62.3
M2_10
60.8
M2_11
60.0
M2_12
58.1
M2_13
55.9
M2_14
55.9
M2_15
54.5
M2_16
54.0
M2_17
53.5
M2_18
53.2
M2_19
52.4
M2_20
52.3
M2_21
52.0
M2_22
51.8
M2_23
50.7
M2_24
50.7
M2_25
50.5
M2_26
49.9
M2_27
49.6
M2_28
49.5
M2_29
49.5
M2_30
49.3
M2_31
48.8
M2_32
48.7
M2_33
48.3
M2_34
48.2
M2_35
47.8
M2_36
47.2
M2_37
47.1
M2_38
47.1
M2_39
46.9
M2_40
46.6
M2_41
46.5
M2_42
46.2
M2_43
45.8
M2_44
45.3
M2_45
45.2
M2_46
45.1
M2_47
45.0
M2_48
44.6
M2_49
44.5
M2_50
44.5
M2_51
44.3
M2_52
43.9
M2_53
43.8
M2_54
43.5
M2_55
43.3
M2_56
42.9
M2_57
42.8
M2_58
42.3
M2_59
42.2
M2_60
42.1
M2_61
42.0
M2_62
42.0
M2_63
41.8
M2_64
41.7
M2_65
41.6
M2_66
41.6
M2_67
41.5
M2_68
41.1
M2_69
40.6
M2_70
40.2
M2_71
40.1
M2_72
40.1
M2_73
40.0
M2_74
39.9
M2_75
39.6
M2_76
39.5
M2_77
39.3
M2_78
38.8
M2_79
38.7
M2_80
38.6
M2_81
38.0
M2_82
37.0
M2_83
36.9
M2_84
36.7
M2_85
36.7
M2_86
36.6
M2_87
36.0
M2_88
35.8
M2_89
35.6
M2_90
34.5
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
