MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.4 nTPM
HPA Brain:26.9 nTPM
GTEx:13.4 nTPM
FANTOM5:114.7 Scaled Tags Per Million
Pig:44.2 nTPM
Mouse:7.5 nTPM
Allen mouse:0.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 26.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 19.0
2019 Male, age 18, unknown 34.1
2666 Male, age 74, left hemisphere 24.8
2828 Female, age 72, unknown 20.9
2411 Female, age 72, unknown 17.3
2219 Male, age 76, both hemispheres 17.2
1827 Male, age 72, unknown 16.7
1833 Male, age 53, unknown 16.6
1830 Male, age 51, unknown 14.9
2586 Male, age 75, left hemisphere 13.9
1870 Female, age 42, unknown 13.5
Dorsal raphe nucleus
nTPM: 15.9
1828 Male, age 53, unknown 19.3
2750 Male, age 76, both hemispheres 17.7
2298 Female, age 72, unknown 16.5
2016 Female, age 72, unknown 15.4
2047 Male, age 72, unknown 10.7
Inferior colliculus
nTPM: 14.4
1890 Male, age 53, unknown 18.8
2097 Female, age 72, unknown 18.4
1848 Female, age 42, unknown 10.9
2849 Male, age 72, unknown 9.5
Median raphe nucleus
nTPM: 16.1
2220 Male, age 76, midline 16.1
Periaquaductal grey, anterior
nTPM: 15.6
2502 Female, age 75, unknown 23.7
1795 Male, age 51, unknown 13.1
1947 Male, age 18, unknown 9.8
Periaquaductal grey, dorsal
nTPM: 15.0
1831 Male, age 72, unknown 19.9
2464 Female, age 72, unknown 14.9
2850 Male, age 76, both hemispheres 14.0
1840 Male, age 53, unknown 11.4
Periaquaductal grey, lateral
nTPM: 14.3
2272 Male, age 74, both hemispheres 16.0
2140 Male, age 76, both hemispheres 15.0
2053 Male, age 18, unknown 11.9
Pretectal area
nTPM: 25.6
1816 Male, age 51, unknown 46.9
1817 Female, age 42, unknown 46.2
1944 Female, age 72, unknown 41.2
2007 Male, age 72, unknown 34.6
1815 Male, age 53, unknown 28.1
2316 Male, age 76, right hemisphere 17.9
2667 Female, age 75, unknown 16.2
2273 Male, age 74, both hemispheres 15.0
2224 Female, age 72, unknown 14.1
2407 Male, age 75, both hemispheres 11.9
2825 Male, age 18, unknown 9.3
Red nucleus
nTPM: 20.1
2785 Male, age 18, unknown 26.5
1904 Male, age 53, unknown 25.9
1821 Female, age 72, unknown 21.7
2503 Female, age 72, unknown 21.5
2725 Female, age 75, unknown 20.2
2584 Male, age 75, left hemisphere 19.2
2588 Male, age 74, left hemisphere 18.5
1865 Male, age 51, unknown 18.3
2227 Male, age 72, unknown 17.9
1954 Female, age 42, unknown 17.3
2769 Male, age 72, unknown 17.2
2823 Male, age 76, right hemisphere 16.7
Substantia nigra
nTPM: 26.9
2665 Male, age 74, both hemispheres 38.0
1916 Female, age 42, unknown 35.0
1851 Male, age 51, unknown 30.3
1889 Female, age 72, unknown 29.0
2699 Male, age 18, unknown 27.6
2409 Female, age 72, unknown 26.4
2241 Male, age 72, unknown 24.4
2590 Female, age 75, unknown 22.6
1941 Male, age 53, unknown 19.4
2583 Male, age 75, right hemisphere 16.7
Superior colliculus
nTPM: 20.8
2087 Female, age 72, unknown 35.7
2261 Male, age 18, unknown 29.6
1995 Male, age 72, unknown 28.4
1913 Female, age 42, unknown 23.1
2587 Male, age 74, left hemisphere 21.7
2668 Female, age 75, unknown 18.7
1796 Male, age 53, unknown 16.5
1895 Male, age 76, right hemisphere 11.9
1839 Male, age 51, unknown 11.7
2664 Male, age 75, both hemispheres 10.9
Ventral tegmental area
nTPM: 22.9
2218 Male, age 76, both hemispheres 30.4
2410 Female, age 72, unknown 27.0
1915 Female, age 42, unknown 24.8
1942 Male, age 51, unknown 21.7
2021 Male, age 53, unknown 18.0
2223 Female, age 72, unknown 15.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 13.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 13.4
Samples: 183

Max nTPM: 77.7
Min nTPM: 2.3
Std nTPM: 7.7
Median nTPM: 12.3
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 77.7
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 50.3
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 38.2
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 30.5
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 30.4
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 30.1
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 27.6
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 27.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 25.1
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 24.5
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 23.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 114.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 114.7
FF:10158-103A5 76 years, female 114.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 44.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 38.3
Samples: 4

Max nTPM: 58.6
Min nTPM: 26.5
Sample A Female 32.2
Sample B Female 58.6
Sample C Male 26.5
Sample D Male 35.8
Midbrain
nTPM: 27.5
Samples: 4

Max nTPM: 45.8
Min nTPM: 16.7
Sample A Female 45.8
Sample B Female 24.4
Sample C Male 23.2
Sample D Male 16.7
Periaqueductal gray
nTPM: 21.9
Samples: 3

Max nTPM: 23.3
Min nTPM: 19.3
Sample B Female 23.2
Sample C Male 23.3
Sample D Male 19.3
Superior colliculi
nTPM: 44.2
Samples: 4

Max nTPM: 80.6
Min nTPM: 26.5
Sample A Female 41.3
Sample B Female 80.6
Sample C Male 28.3
Sample D Male 26.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 7.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 7.6
Samples: 4

Max nTPM: 8.2
Min nTPM: 7.1
Sample A Male 8.2
Sample B Male 7.1
Sample C Female 7.2
Sample D Female 7.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
69133680 Antisense, RP_050321_02_A09, Mouse strain C57BL/6J (56 days, male) 0.1
74819696 Antisense, RP_060315_02_H12, Mouse strain C57BL/6J (56 days, male) 0.1

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