HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:39.8 nTPM
HPA Brain:210.0 nTPM
GTEx:39.8 nTPM
FANTOM5:170.5 Scaled Tags Per Million
Pig:163.9 nTPM
Mouse:98.1 nTPM
Allen mouse:4.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 210.0
Sample id Sample description nTPM
Hippocampus
nTPM: 170.6
1898 Male, age 80, left hemisphere 192.4
1911 Female, age 85, right hemisphere 181.8
2529 Female, age 94, left hemisphere 175.0
2621 Female, age 67, right hemisphere 173.0
2148 Female, age 91, left hemisphere 154.5
1855 Male, age 76, left hemisphere 146.9
Dentate gyrus
nTPM: 180.4
2528 Male, age 74, both hemispheres 189.2
2010 Male, age 76, both hemispheres 188.8
2530 Female, age 94, left hemisphere 186.9
1927 Female, age 91, both hemispheres 185.8
2246 Female, age 85, both hemispheres 167.6
2531 Female, age 67, both hemispheres 163.8
Entorhinal gyrus
nTPM: 194.1
2117 Female, age 91, right hemisphere 235.1
2764 Male, age 80, right hemisphere 222.2
1938 Female, age 85, left hemisphere 198.3
1787 Male, age 76, left hemisphere 184.2
2613 Female, age 94, left hemisphere 178.5
2686 Male, age 75, right hemisphere 146.2
Hippocampus, CA1
nTPM: 184.1
2749 Male, age 80, left hemisphere 235.5
1873 Female, age 85, both hemispheres 188.5
2527 Male, age 74, both hemispheres 183.4
2082 Female, age 91, right hemisphere 168.7
2045 Male, age 76, both hemispheres 144.7
Hippocampus, CA2
nTPM: 195.5
1963 Male, age 80, left hemisphere 228.2
1892 Male, age 76, both hemispheres 207.1
2249 Male, age 74, both hemispheres 206.0
2437 Female, age 94, left hemisphere 192.5
2113 Female, age 91, right hemisphere 175.7
1940 Female, age 85, left hemisphere 163.3
Hippocampus, CA3
nTPM: 163.1
1891 Female, age 85, both hemispheres 211.2
1867 Male, age 76, both hemispheres 189.4
2137 Male, age 80, left hemisphere 177.3
2436 Male, age 74, both hemispheres 163.7
2620 Female, age 94, left hemisphere 129.1
2861 Female, age 67, both hemispheres 107.8
Parahippocampal cortex
nTPM: 187.6
1850 Male, age 80, both hemispheres 231.5
1990 Female, age 91, right hemisphere 215.7
2532 Female, age 72, left hemisphere 214.1
1933 Female, age 85, both hemispheres 195.2
2693 Female, age 94, both hemispheres 190.2
2692 Male, age 74, both hemispheres 184.8
2245 Female, age 91, both hemispheres 180.7
2018 Male, age 76, both hemispheres 176.3
2250 Female, age 67, right hemisphere 163.4
2622 Female, age 67, right hemisphere 124.1
Perirhinal gyrus
nTPM: 206.9
1794 Male, age 80, right hemisphere 235.8
2521 Female, age 94, right hemisphere 210.4
1841 Female, age 85, right hemisphere 204.0
1847 Female, age 91, left hemisphere 199.6
2848 Male, age 76, right hemisphere 184.6
Subiculum
nTPM: 210.0
1977 Female, age 85, both hemispheres 236.7
1901 Male, age 80, both hemispheres 235.3
2438 Female, age 94, left hemisphere 215.9
2042 Male, age 76, both hemispheres 208.7
2619 Male, age 74, both hemispheres 202.1
2729 Female, age 91, right hemisphere 161.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 39.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 39.8
Samples: 255

Max nTPM: 89.0
Min nTPM: 14.5
Std nTPM: 11.4
Median nTPM: 39.3
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 89.0
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 78.7
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 76.5
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 70.4
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 66.3
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 65.3
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 64.8
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 61.6
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 60.5
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 60.0
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 59.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 170.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 170.5
FF:10153-102I9 76 years, female 184.2
FF:10169-103B7 60 years, female 156.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 163.9
Pig sample Sample description nTPM
Subiculum
nTPM: 151.1
Samples: 4

Max nTPM: 177.3
Min nTPM: 136.5
Sample A Female 177.3
Sample B Female 152.8
Sample C Male 136.5
Sample D Male 137.8
Dorsal hippocampus
nTPM: 163.9
Samples: 4

Max nTPM: 191.9
Min nTPM: 128.4
Sample A Female 191.9
Sample B Female 159.9
Sample C Male 175.4
Sample D Male 128.4
Entorhinal cortex
nTPM: 158.9
Samples: 4

Max nTPM: 186.5
Min nTPM: 143.1
Sample A Female 151.1
Sample B Female 186.5
Sample C Male 154.7
Sample D Male 143.1
Ventral hippocampus
nTPM: 142.6
Samples: 4

Max nTPM: 158.9
Min nTPM: 129.7
Sample A Female 158.9
Sample B Female 129.7
Sample C Male 134.2
Sample D Male 147.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 98.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 98.1
Samples: 4

Max nTPM: 103.8
Min nTPM: 94.3
Sample A Male 98.5
Sample B Male 95.8
Sample C Female 94.3
Sample D Female 103.8
Hippocampal formation
nTPM: 86.3
Samples: 4

Max nTPM: 89.9
Min nTPM: 83.1
Sample A Male 84.9
Sample B Male 87.3
Sample C Female 89.9
Sample D Female 83.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 4.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 4.0
71211477 Antisense, RP_050816_01_F10, Mouse strain C57BL/6J (56 days, male) 6.5
71724852 Antisense, RP_050921_01_H01, Mouse strain C57BL/6J (56 days, male) 1.5

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