MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:73.7 nTPM
HPA Brain:34.8 nTPM
GTEx:73.7 nTPM
FANTOM5:96.7 Scaled Tags Per Million
Pig:170.2 nTPM
Mouse:162.9 nTPM
Allen mouse:10.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 34.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 29.9
2019 Male, age 18, unknown 40.7
2411 Female, age 72, unknown 38.2
1870 Female, age 42, unknown 34.1
1827 Male, age 72, unknown 29.7
1833 Male, age 53, unknown 28.5
2828 Female, age 72, unknown 28.2
2219 Male, age 76, both hemispheres 28.0
1830 Male, age 51, unknown 26.6
2586 Male, age 75, left hemisphere 25.5
2666 Male, age 74, left hemisphere 19.9
Dorsal raphe nucleus
nTPM: 33.6
2298 Female, age 72, unknown 42.4
2047 Male, age 72, unknown 33.4
2750 Male, age 76, both hemispheres 33.2
1828 Male, age 53, unknown 32.9
2016 Female, age 72, unknown 26.1
Inferior colliculus
nTPM: 29.2
2097 Female, age 72, unknown 33.5
1890 Male, age 53, unknown 30.5
1848 Female, age 42, unknown 29.4
2849 Male, age 72, unknown 23.4
Median raphe nucleus
nTPM: 30.9
2220 Male, age 76, midline 30.9
Periaquaductal grey, anterior
nTPM: 29.6
1947 Male, age 18, unknown 33.0
1795 Male, age 51, unknown 28.5
2502 Female, age 75, unknown 27.2
Periaquaductal grey, dorsal
nTPM: 26.5
2850 Male, age 76, both hemispheres 27.7
2464 Female, age 72, unknown 26.5
1831 Male, age 72, unknown 26.4
1840 Male, age 53, unknown 25.2
Periaquaductal grey, lateral
nTPM: 28.1
2272 Male, age 74, both hemispheres 34.0
2053 Male, age 18, unknown 25.2
2140 Male, age 76, both hemispheres 25.2
Pretectal area
nTPM: 33.9
1817 Female, age 42, unknown 44.1
2007 Male, age 72, unknown 40.5
2667 Female, age 75, unknown 39.6
1816 Male, age 51, unknown 39.0
2273 Male, age 74, both hemispheres 36.7
1944 Female, age 72, unknown 36.3
1815 Male, age 53, unknown 36.0
2224 Female, age 72, unknown 31.6
2316 Male, age 76, right hemisphere 28.1
2825 Male, age 18, unknown 24.1
2407 Male, age 75, both hemispheres 16.9
Red nucleus
nTPM: 32.7
1821 Female, age 72, unknown 44.4
2785 Male, age 18, unknown 36.9
2725 Female, age 75, unknown 35.6
2503 Female, age 72, unknown 35.4
1865 Male, age 51, unknown 35.0
1904 Male, age 53, unknown 34.8
2823 Male, age 76, right hemisphere 34.4
1954 Female, age 42, unknown 31.5
2227 Male, age 72, unknown 29.9
2769 Male, age 72, unknown 29.7
2588 Male, age 74, left hemisphere 26.3
2584 Male, age 75, left hemisphere 18.5
Substantia nigra
nTPM: 34.8
1889 Female, age 72, unknown 45.4
1916 Female, age 42, unknown 42.4
1851 Male, age 51, unknown 39.4
2241 Male, age 72, unknown 36.5
2409 Female, age 72, unknown 34.5
1941 Male, age 53, unknown 34.4
2665 Male, age 74, both hemispheres 32.4
2699 Male, age 18, unknown 29.4
2590 Female, age 75, unknown 28.5
2583 Male, age 75, right hemisphere 25.3
Superior colliculus
nTPM: 29.5
2587 Male, age 74, left hemisphere 36.7
1895 Male, age 76, right hemisphere 34.7
1913 Female, age 42, unknown 32.0
1995 Male, age 72, unknown 31.1
1796 Male, age 53, unknown 30.6
2087 Female, age 72, unknown 30.5
2261 Male, age 18, unknown 28.4
2668 Female, age 75, unknown 28.2
1839 Male, age 51, unknown 25.9
2664 Male, age 75, both hemispheres 16.5
Ventral tegmental area
nTPM: 33.4
2410 Female, age 72, unknown 43.5
1915 Female, age 42, unknown 36.1
2218 Male, age 76, both hemispheres 33.7
2223 Female, age 72, unknown 31.7
1942 Male, age 51, unknown 28.3
2021 Male, age 53, unknown 27.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 73.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 73.7
Samples: 183

Max nTPM: 111.0
Min nTPM: 45.5
Std nTPM: 11.6
Median nTPM: 72.3
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 111.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 108.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 104.7
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 101.1
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 100.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 98.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 97.6
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 96.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 95.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 94.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 92.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 96.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 96.7
FF:10158-103A5 76 years, female 96.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 170.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 150.6
Samples: 4

Max nTPM: 196.3
Min nTPM: 122.7
Sample A Female 196.3
Sample B Female 122.7
Sample C Male 158.7
Sample D Male 124.7
Midbrain
nTPM: 167.1
Samples: 4

Max nTPM: 209.5
Min nTPM: 144.8
Sample A Female 209.5
Sample B Female 146.7
Sample C Male 167.5
Sample D Male 144.8
Periaqueductal gray
nTPM: 121.3
Samples: 3

Max nTPM: 132.0
Min nTPM: 113.4
Sample B Female 118.6
Sample C Male 132.0
Sample D Male 113.4
Superior colliculi
nTPM: 170.2
Samples: 4

Max nTPM: 190.4
Min nTPM: 147.8
Sample A Female 190.4
Sample B Female 147.8
Sample C Male 189.8
Sample D Male 152.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 162.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 162.9
Samples: 4

Max nTPM: 172.0
Min nTPM: 159.0
Sample A Male 159.0
Sample B Male 159.1
Sample C Female 161.3
Sample D Female 172.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 10.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.9
564780 Antisense, RP_040826_01_F07, Mouse strain C57BL/6J (56 days, male) 10.9

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