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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
142.3
Sample id
Sample description
nTPM
Arcuate nucleus nTPM: 114.2
2226
Male, age 75, left hemisphere
173.3
1961
Female, age 42, unknown
55.1
Dorsomedial nucleus nTPM: 94.0
1989
Male, age 62, unknown
147.9
2041
Female, age 72, unknown
75.3
2017
Female, age 42, unknown
59.0
Lateral hypothalamic area nTPM: 142.3
2228
Male, age 66, unknown
190.3
2271
Male, age 75, both hemispheres
161.1
1791
Male, age 80, right hemisphere
123.9
2412
Male, age 62, unknown
94.0
Mammillary body nTPM: 116.2
1923
Female, age 72, unknown
176.5
2413
Male, age 66, unknown
121.3
1945
Male, age 80, right hemisphere
103.2
1948
Female, age 72, unknown
100.7
1834
Female, age 42, unknown
79.4
Paraventricular nucleus nTPM: 55.3
2700
Male, age 62, unknown
55.3
Preoptic area nTPM: 99.6
1907
Male, age 80, right hemisphere
139.0
1861
Female, age 42, unknown
91.2
2414
Female, age 72, unknown
68.6
Supraoptic nucleus nTPM: 54.4
2835
Female, age 72, unknown
79.2
1894
Female, age 72, unknown
54.4
2043
Male, age 62, unknown
29.7
Ventromedial nucleus nTPM: 59.8
1982
Female, age 72, unknown
67.7
1822
Female, age 42, unknown
51.9
HYPOTHALAMUS - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
60.5
GTEx sample id
Sample description
nTPM
Brain - Hypothalamus Average nTPM: 60.5
Samples: 257
Max nTPM: 161.5
Min nTPM: 4.6
Std nTPM: 27.5
Median nTPM: 59.0
The Human Protein Atlas project is funded
