MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:71.4 nTPM
HPA Brain:167.1 nTPM
GTEx:71.4 nTPM
FANTOM5:8.5 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 167.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 87.8
2219 Male, age 76, both hemispheres 149.1
1827 Male, age 72, unknown 103.1
2411 Female, age 72, unknown 98.4
2666 Male, age 74, left hemisphere 94.3
2019 Male, age 18, unknown 94.2
2828 Female, age 72, unknown 86.5
1833 Male, age 53, unknown 76.6
1830 Male, age 51, unknown 65.7
2586 Male, age 75, left hemisphere 58.1
1870 Female, age 42, unknown 52.1
Dorsal raphe nucleus
nTPM: 82.2
1828 Male, age 53, unknown 107.2
2047 Male, age 72, unknown 89.0
2750 Male, age 76, both hemispheres 78.5
2298 Female, age 72, unknown 76.1
2016 Female, age 72, unknown 60.2
Inferior colliculus
nTPM: 104.8
2097 Female, age 72, unknown 124.2
1848 Female, age 42, unknown 106.9
1890 Male, age 53, unknown 101.5
2849 Male, age 72, unknown 86.7
Median raphe nucleus
nTPM: 105.4
2220 Male, age 76, midline 105.4
Periaquaductal grey, anterior
nTPM: 100.8
2502 Female, age 75, unknown 113.9
1947 Male, age 18, unknown 103.1
1795 Male, age 51, unknown 85.5
Periaquaductal grey, dorsal
nTPM: 65.2
2464 Female, age 72, unknown 69.3
1840 Male, age 53, unknown 64.8
1831 Male, age 72, unknown 63.4
2850 Male, age 76, both hemispheres 63.1
Periaquaductal grey, lateral
nTPM: 67.2
2140 Male, age 76, both hemispheres 70.4
2053 Male, age 18, unknown 70.1
2272 Male, age 74, both hemispheres 61.2
Pretectal area
nTPM: 109.6
1944 Female, age 72, unknown 184.5
1816 Male, age 51, unknown 176.7
1817 Female, age 42, unknown 144.4
2667 Female, age 75, unknown 138.9
2007 Male, age 72, unknown 124.8
1815 Male, age 53, unknown 108.4
2407 Male, age 75, both hemispheres 76.8
2316 Male, age 76, right hemisphere 66.3
2224 Female, age 72, unknown 65.8
2825 Male, age 18, unknown 59.9
2273 Male, age 74, both hemispheres 58.6
Red nucleus
nTPM: 74.5
1821 Female, age 72, unknown 114.0
2785 Male, age 18, unknown 86.1
2503 Female, age 72, unknown 75.9
2584 Male, age 75, left hemisphere 74.4
1954 Female, age 42, unknown 73.7
1865 Male, age 51, unknown 73.5
2823 Male, age 76, right hemisphere 70.6
2769 Male, age 72, unknown 67.8
1904 Male, age 53, unknown 67.5
2227 Male, age 72, unknown 66.7
2725 Female, age 75, unknown 63.4
2588 Male, age 74, left hemisphere 60.6
Substantia nigra
nTPM: 167.1
1916 Female, age 42, unknown 314.5
1941 Male, age 53, unknown 260.4
2409 Female, age 72, unknown 191.8
1851 Male, age 51, unknown 186.5
2241 Male, age 72, unknown 178.9
1889 Female, age 72, unknown 153.3
2699 Male, age 18, unknown 139.4
2665 Male, age 74, both hemispheres 130.9
2583 Male, age 75, right hemisphere 61.9
2590 Female, age 75, unknown 53.6
Superior colliculus
nTPM: 103.8
2668 Female, age 75, unknown 193.5
2087 Female, age 72, unknown 167.6
1895 Male, age 76, right hemisphere 121.3
2261 Male, age 18, unknown 120.4
1796 Male, age 53, unknown 89.5
1913 Female, age 42, unknown 82.6
1839 Male, age 51, unknown 74.6
1995 Male, age 72, unknown 69.1
2664 Male, age 75, both hemispheres 61.2
2587 Male, age 74, left hemisphere 57.8
Ventral tegmental area
nTPM: 139.7
2410 Female, age 72, unknown 211.7
2218 Male, age 76, both hemispheres 210.1
1915 Female, age 42, unknown 174.8
1942 Male, age 51, unknown 107.6
2223 Female, age 72, unknown 69.0
2021 Male, age 53, unknown 64.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 71.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 71.4
Samples: 183

Max nTPM: 420.3
Min nTPM: 1.8
Std nTPM: 75.6
Median nTPM: 43.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 420.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 347.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 316.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 313.6
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 310.3
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 299.5
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 274.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 244.6
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 203.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 196.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 191.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 8.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 8.5
FF:10158-103A5 76 years, female 8.5

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