MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.8 nTPM
HPA Brain:23.1 nTPM
GTEx:17.8 nTPM
FANTOM5:63.1 Scaled Tags Per Million
Pig:50.6 nTPM
Mouse:27.2 nTPM
Allen mouse:5.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 23.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 21.5
1827 Male, age 72, unknown 23.8
2411 Female, age 72, unknown 23.7
1830 Male, age 51, unknown 22.5
1833 Male, age 53, unknown 22.2
2019 Male, age 18, unknown 21.7
1870 Female, age 42, unknown 21.6
2219 Male, age 76, both hemispheres 21.1
2828 Female, age 72, unknown 20.9
2666 Male, age 74, left hemisphere 19.4
2586 Male, age 75, left hemisphere 18.5
Dorsal raphe nucleus
nTPM: 19.8
2750 Male, age 76, both hemispheres 21.1
2298 Female, age 72, unknown 20.1
1828 Male, age 53, unknown 19.8
2016 Female, age 72, unknown 19.8
2047 Male, age 72, unknown 18.2
Inferior colliculus
nTPM: 21.7
2097 Female, age 72, unknown 23.5
2849 Male, age 72, unknown 21.9
1890 Male, age 53, unknown 20.9
1848 Female, age 42, unknown 20.4
Median raphe nucleus
nTPM: 18.1
2220 Male, age 76, midline 18.1
Periaquaductal grey, anterior
nTPM: 20.1
1947 Male, age 18, unknown 21.1
1795 Male, age 51, unknown 20.1
2502 Female, age 75, unknown 19.0
Periaquaductal grey, dorsal
nTPM: 22.4
1831 Male, age 72, unknown 23.9
2850 Male, age 76, both hemispheres 22.3
1840 Male, age 53, unknown 21.9
2464 Female, age 72, unknown 21.6
Periaquaductal grey, lateral
nTPM: 21.7
2140 Male, age 76, both hemispheres 23.0
2053 Male, age 18, unknown 22.7
2272 Male, age 74, both hemispheres 19.4
Pretectal area
nTPM: 22.7
2407 Male, age 75, both hemispheres 26.2
1816 Male, age 51, unknown 24.2
1815 Male, age 53, unknown 23.8
2007 Male, age 72, unknown 23.8
2316 Male, age 76, right hemisphere 22.9
2273 Male, age 74, both hemispheres 22.7
1817 Female, age 42, unknown 22.3
2825 Male, age 18, unknown 21.9
2667 Female, age 75, unknown 21.1
1944 Female, age 72, unknown 20.9
2224 Female, age 72, unknown 19.6
Red nucleus
nTPM: 23.1
2503 Female, age 72, unknown 24.5
1821 Female, age 72, unknown 24.3
2588 Male, age 74, left hemisphere 24.2
2725 Female, age 75, unknown 23.6
1904 Male, age 53, unknown 23.1
1865 Male, age 51, unknown 22.8
1954 Female, age 42, unknown 22.7
2769 Male, age 72, unknown 22.7
2823 Male, age 76, right hemisphere 22.7
2785 Male, age 18, unknown 22.5
2227 Male, age 72, unknown 22.4
2584 Male, age 75, left hemisphere 22.3
Substantia nigra
nTPM: 20.6
2583 Male, age 75, right hemisphere 24.6
2590 Female, age 75, unknown 23.8
2409 Female, age 72, unknown 22.6
2699 Male, age 18, unknown 21.2
2665 Male, age 74, both hemispheres 20.5
1941 Male, age 53, unknown 20.3
1889 Female, age 72, unknown 20.1
1851 Male, age 51, unknown 18.8
1916 Female, age 42, unknown 17.4
2241 Male, age 72, unknown 17.0
Superior colliculus
nTPM: 22.2
1995 Male, age 72, unknown 24.3
1913 Female, age 42, unknown 23.7
1895 Male, age 76, right hemisphere 23.2
2087 Female, age 72, unknown 23.2
1796 Male, age 53, unknown 22.7
2587 Male, age 74, left hemisphere 22.1
1839 Male, age 51, unknown 21.4
2668 Female, age 75, unknown 21.1
2261 Male, age 18, unknown 20.3
2664 Male, age 75, both hemispheres 19.6
Ventral tegmental area
nTPM: 19.8
2223 Female, age 72, unknown 21.0
2410 Female, age 72, unknown 20.6
1942 Male, age 51, unknown 20.1
2218 Male, age 76, both hemispheres 19.1
1915 Female, age 42, unknown 19.0
2021 Male, age 53, unknown 18.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 17.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.8
Samples: 183

Max nTPM: 41.1
Min nTPM: 9.9
Std nTPM: 5.2
Median nTPM: 16.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 41.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 40.7
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 37.3
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 36.0
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 31.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 31.1
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 30.6
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 28.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 28.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 26.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 26.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 63.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 63.1
FF:10158-103A5 76 years, female 63.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 50.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 45.6
Samples: 4

Max nTPM: 50.2
Min nTPM: 38.2
Sample A Female 38.2
Sample B Female 49.0
Sample C Male 44.8
Sample D Male 50.2
Midbrain
nTPM: 48.9
Samples: 4

Max nTPM: 53.6
Min nTPM: 46.1
Sample A Female 48.6
Sample B Female 53.6
Sample C Male 46.1
Sample D Male 47.1
Periaqueductal gray
nTPM: 50.6
Samples: 3

Max nTPM: 52.7
Min nTPM: 46.9
Sample B Female 52.7
Sample C Male 46.9
Sample D Male 52.1
Superior colliculi
nTPM: 43.4
Samples: 4

Max nTPM: 46.1
Min nTPM: 36.5
Sample A Female 36.5
Sample B Female 44.8
Sample C Male 46.1
Sample D Male 46.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 27.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 27.2
Samples: 4

Max nTPM: 31.1
Min nTPM: 25.2
Sample A Male 25.6
Sample B Male 25.2
Sample C Female 31.1
Sample D Female 27.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 5.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.9
69202878 Antisense, RP_050324_04_E10, Mouse strain C57BL/6J (56 days, male) 11.3
70920075 Antisense, RP_050713_02_F05, Mouse strain C57BL/6J (56 days, male) 0.5

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