A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
5.5
nTPM
Monaco:
40.1
nTPM
Schmiedel:
36.9
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5.5
HPA sample
nTPM
NK-cell nTPM: 5.5
Samples: 6
Max nTPM: 7.9
Min nTPM: 0.6
P10809_1013
5.7
P10809_1033
7.9
P10809_1052
5.8
P10809_1071
6.4
P10809_1093
0.6
P10809_1103
6.4
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
40.1
Monaco sample
nTPM
NK-cell nTPM: 40.1
Samples: 4
Max nTPM: 59.2
Min nTPM: 16.8
RHH5316_R3683
50.8
RHH5224_R3596
59.2
RHH5253_R3625
16.8
RHH5282_R3654
33.7
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
36.9
Schmiedel sample id
TPM
NK-cell TPM: 36.9
Samples: 90
Max TPM: 96.6
Min TPM: 19.3
NK_1
96.6
NK_2
74.3
NK_3
64.0
NK_4
63.7
NK_5
62.8
NK_6
61.1
NK_7
58.1
NK_8
56.9
NK_9
55.5
NK_10
50.8
NK_11
48.2
NK_12
46.6
NK_13
46.3
NK_14
46.3
NK_15
46.0
NK_16
45.1
NK_17
43.9
NK_18
43.8
NK_19
43.6
NK_20
43.5
NK_21
43.1
NK_22
42.5
NK_23
42.1
NK_24
42.0
NK_25
41.9
NK_26
41.4
NK_27
41.4
NK_28
41.3
NK_29
41.2
NK_30
40.6
NK_31
39.7
NK_32
39.7
NK_33
39.4
NK_34
39.2
NK_35
39.1
NK_36
38.6
NK_37
38.6
NK_38
38.4
NK_39
38.0
NK_40
37.8
NK_41
37.5
NK_42
37.3
NK_43
36.8
NK_44
36.6
NK_45
36.3
NK_46
35.7
NK_47
35.2
NK_48
34.6
NK_49
34.4
NK_50
34.2
NK_51
34.0
NK_52
33.1
NK_53
32.7
NK_54
32.1
NK_55
32.1
NK_56
32.0
NK_57
31.6
NK_58
31.2
NK_59
30.6
NK_60
29.8
NK_61
29.8
NK_62
28.7
NK_63
28.3
NK_64
28.3
NK_65
27.9
NK_66
27.7
NK_67
27.5
NK_68
27.0
NK_69
26.7
NK_70
26.3
NK_71
26.1
NK_72
26.1
NK_73
25.7
NK_74
25.5
NK_75
25.4
NK_76
24.9
NK_77
24.5
NK_78
24.3
NK_79
24.0
NK_80
23.9
NK_81
23.7
NK_82
23.6
NK_83
22.5
NK_84
21.7
NK_85
21.5
NK_86
21.4
NK_87
20.6
NK_88
19.7
NK_89
19.5
NK_90
19.3
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