A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
9.3
nTPM
Monaco:
42.0
nTPM
Schmiedel:
27.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
9.3
HPA sample
nTPM
Classical monocyte nTPM: 9.3
Samples: 6
Max nTPM: 11.2
Min nTPM: 4.8
P10809_1003
4.8
P10809_1020
11.2
P10809_1039
11.0
P10809_1058
9.0
P10809_1080
10.2
P10809_1107
9.5
Intermediate monocyte nTPM: 5.8
Samples: 6
Max nTPM: 8.0
Min nTPM: 3.6
P10809_1004
4.2
P10809_1023
5.8
P10809_1042
7.8
P10809_1061
5.3
P10809_1081
8.0
P10809_1108
3.6
Non-classical monocyte nTPM: 5.6
Samples: 5
Max nTPM: 7.6
Min nTPM: 3.7
P10809_1005
3.7
P10809_1053
5.7
P10809_1072
7.6
P10809_1082
6.3
P10809_1109
4.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
42.0
Monaco sample
nTPM
Classical monocyte nTPM: 37.4
Samples: 4
Max nTPM: 43.5
Min nTPM: 33.7
RHH5313_R3680
43.5
RHH5221_R3593
33.7
RHH5250_R3622
34.6
RHH5279_R3651
37.9
Intermediate monocyte nTPM: 34.0
Samples: 4
Max nTPM: 42.8
Min nTPM: 23.3
RHH5314_R3681
23.3
RHH5222_R3594
37.9
RHH5251_R3623
32.1
RHH5280_R3652
42.8
Non-classical monocyte nTPM: 42.0
Samples: 4
Max nTPM: 64.9
Min nTPM: 30.5
RHH5315_R3682
38.3
RHH5223_R3595
30.5
RHH5252_R3624
34.3
RHH5281_R3653
64.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
27.8
Schmiedel sample id
TPM
Classical monocyte TPM: 12.1
Samples: 91
Max TPM: 19.5
Min TPM: 6.2
MONOCYTES_1
19.5
MONOCYTES_2
17.3
MONOCYTES_3
17.0
MONOCYTES_4
17.0
MONOCYTES_5
16.5
MONOCYTES_6
16.4
MONOCYTES_7
16.2
MONOCYTES_8
15.8
MONOCYTES_9
15.7
MONOCYTES_10
15.6
MONOCYTES_11
15.5
MONOCYTES_12
15.4
MONOCYTES_13
15.1
MONOCYTES_14
15.0
MONOCYTES_15
14.9
MONOCYTES_16
14.9
MONOCYTES_17
14.7
MONOCYTES_18
14.7
MONOCYTES_19
14.6
MONOCYTES_20
14.4
MONOCYTES_21
14.4
MONOCYTES_22
14.4
MONOCYTES_23
14.3
MONOCYTES_24
14.2
MONOCYTES_25
14.0
MONOCYTES_26
13.9
MONOCYTES_27
13.8
MONOCYTES_28
13.8
MONOCYTES_29
13.7
MONOCYTES_30
13.5
MONOCYTES_31
13.2
MONOCYTES_32
12.9
MONOCYTES_33
12.9
MONOCYTES_34
12.8
MONOCYTES_35
12.8
MONOCYTES_36
12.8
MONOCYTES_37
12.7
MONOCYTES_38
12.7
MONOCYTES_39
12.7
MONOCYTES_40
12.6
MONOCYTES_41
12.5
MONOCYTES_42
12.3
MONOCYTES_43
12.3
MONOCYTES_44
12.2
MONOCYTES_45
12.2
MONOCYTES_46
12.1
MONOCYTES_47
12.1
MONOCYTES_48
11.9
MONOCYTES_49
11.9
MONOCYTES_50
11.9
MONOCYTES_51
11.7
MONOCYTES_52
11.6
MONOCYTES_53
11.6
MONOCYTES_54
11.5
MONOCYTES_55
11.4
MONOCYTES_56
11.3
MONOCYTES_57
11.1
MONOCYTES_58
11.0
MONOCYTES_59
11.0
MONOCYTES_60
10.8
MONOCYTES_61
10.8
MONOCYTES_62
10.6
MONOCYTES_63
10.6
MONOCYTES_64
10.6
MONOCYTES_65
10.4
MONOCYTES_66
10.4
MONOCYTES_67
10.3
MONOCYTES_68
10.3
MONOCYTES_69
10.1
MONOCYTES_70
10.0
MONOCYTES_71
9.8
MONOCYTES_72
9.6
MONOCYTES_73
9.6
MONOCYTES_74
9.6
MONOCYTES_75
9.5
MONOCYTES_76
9.2
MONOCYTES_77
9.1
MONOCYTES_78
9.1
MONOCYTES_79
9.0
MONOCYTES_80
8.9
MONOCYTES_81
8.9
MONOCYTES_82
8.7
MONOCYTES_83
8.6
MONOCYTES_84
8.5
MONOCYTES_85
8.3
MONOCYTES_86
8.3
MONOCYTES_87
7.8
MONOCYTES_88
7.5
MONOCYTES_89
7.4
MONOCYTES_90
7.3
MONOCYTES_91
6.2
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Non-classical monocyte TPM: 27.8
Samples: 90
Max TPM: 45.3
Min TPM: 16.0
M2_1
45.3
M2_2
39.8
M2_3
37.7
M2_4
36.7
M2_5
36.5
M2_6
36.2
M2_7
35.8
M2_8
35.8
M2_9
35.7
M2_10
35.7
M2_11
35.3
M2_12
35.1
M2_13
35.0
M2_14
34.9
M2_15
34.6
M2_16
34.2
M2_17
33.9
M2_18
33.6
M2_19
32.5
M2_20
31.9
M2_21
31.8
M2_22
31.8
M2_23
31.7
M2_24
31.5
M2_25
31.1
M2_26
31.0
M2_27
30.9
M2_28
30.7
M2_29
30.6
M2_30
30.1
M2_31
30.0
M2_32
29.6
M2_33
29.6
M2_34
29.3
M2_35
29.3
M2_36
29.3
M2_37
29.3
M2_38
28.8
M2_39
28.6
M2_40
28.5
M2_41
28.3
M2_42
27.9
M2_43
27.9
M2_44
27.7
M2_45
27.6
M2_46
27.5
M2_47
27.4
M2_48
27.3
M2_49
27.1
M2_50
26.7
M2_51
26.0
M2_52
25.9
M2_53
25.5
M2_54
25.3
M2_55
25.3
M2_56
25.2
M2_57
25.0
M2_58
25.0
M2_59
25.0
M2_60
24.9
M2_61
24.8
M2_62
24.7
M2_63
24.7
M2_64
24.7
M2_65
24.6
M2_66
24.0
M2_67
24.0
M2_68
24.0
M2_69
23.9
M2_70
23.8
M2_71
23.2
M2_72
23.1
M2_73
23.1
M2_74
23.0
M2_75
22.8
M2_76
22.3
M2_77
22.2
M2_78
22.2
M2_79
22.1
M2_80
21.3
M2_81
21.1
M2_82
21.0
M2_83
21.0
M2_84
19.0
M2_85
18.8
M2_86
18.7
M2_87
18.2
M2_88
17.8
M2_89
16.2
M2_90
16.0
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